BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042339
         (851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004173804.1| PREDICTED: EID1-like F-box protein 3-like [C...   262   8e-68
ref|XP_004140217.1| PREDICTED: EID1-like F-box protein 3-like [C...   260   3e-67
ref|XP_002276328.1| PREDICTED: EID1-like F-box protein 3-like [V...   254   2e-65
ref|XP_002533076.1| conserved hypothetical protein [Ricinus comm...   249   4e-64
gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Ni...   247   2e-63

>ref|XP_004173804.1| PREDICTED: EID1-like F-box protein 3-like [Cucumis sativus]
          Length = 313

 Score =  262 bits (669), Expect = 8e-68
 Identities = 120/174 (68%), Positives = 139/174 (79%)
 Frame = -2

Query: 847 SRAPRMVPTLVNGEPNLRVGDGWHALAKLLFFCCGCVPSRHFKIDQTLLGHFSKTSRFSK 668
           +RAPRM+  L  G PN RVG GW+ALAKL+FFCCGC  SRHFK+ Q L GHF   SRFSK
Sbjct: 70  NRAPRMLAALTTGAPNARVGGGWNALAKLMFFCCGCQSSRHFKVAQPLPGHFVHESRFSK 129

Query: 667 TSGQSFLMKRCQSDLLYISDPCEHTVEGSFEDLGVFRGVFRGFMKSKTRDLLIGRKAEFE 488
           TSGQSFL K+C+ DLLY+SDPCEH+     +DLG++RG+FRGFM+SKTR  LI R+   E
Sbjct: 130 TSGQSFLTKKCRGDLLYVSDPCEHSNGRDEDDLGIYRGIFRGFMRSKTRAFLIKREVRLE 189

Query: 487 ELIRCPYCGARVWSMTTAKLVPKSAAKRLGSHHEKLEYFVCVNGHVHGSCLLVP 326
           E  RCPYCGARVWSMTTA+LVPKS A+RLG+H   LEYFVCVNGH+HGSC LVP
Sbjct: 190 ETTRCPYCGARVWSMTTARLVPKSVARRLGTHDGGLEYFVCVNGHLHGSCWLVP 243


>ref|XP_004140217.1| PREDICTED: EID1-like F-box protein 3-like [Cucumis sativus]
          Length = 313

 Score =  260 bits (664), Expect = 3e-67
 Identities = 119/174 (68%), Positives = 139/174 (79%)
 Frame = -2

Query: 847 SRAPRMVPTLVNGEPNLRVGDGWHALAKLLFFCCGCVPSRHFKIDQTLLGHFSKTSRFSK 668
           +RAPRM+  L  G PN RVG GW+ALAKL+FFCCGC  SRHFK+ Q L GHF   SRFSK
Sbjct: 70  NRAPRMLAALTTGAPNARVGGGWNALAKLMFFCCGCQSSRHFKVAQPLPGHFVHESRFSK 129

Query: 667 TSGQSFLMKRCQSDLLYISDPCEHTVEGSFEDLGVFRGVFRGFMKSKTRDLLIGRKAEFE 488
           TSGQSFL K+C+ DLLY+SDPCEH+     ++LG++RG+FRGFM+SKTR  LI R+   E
Sbjct: 130 TSGQSFLTKKCRGDLLYVSDPCEHSNGRDEDNLGIYRGIFRGFMRSKTRAFLIKREVRLE 189

Query: 487 ELIRCPYCGARVWSMTTAKLVPKSAAKRLGSHHEKLEYFVCVNGHVHGSCLLVP 326
           E  RCPYCGARVWSMTTA+LVPKS A+RLG+H   LEYFVCVNGH+HGSC LVP
Sbjct: 190 ETTRCPYCGARVWSMTTARLVPKSVARRLGTHDGGLEYFVCVNGHLHGSCWLVP 243


>ref|XP_002276328.1| PREDICTED: EID1-like F-box protein 3-like [Vitis vinifera]
          Length = 300

 Score =  254 bits (649), Expect = 2e-65
 Identities = 115/173 (66%), Positives = 138/173 (79%)
 Frame = -2

Query: 844 RAPRMVPTLVNGEPNLRVGDGWHALAKLLFFCCGCVPSRHFKIDQTLLGHFSKTSRFSKT 665
           RAPRMV  L  G PN R+G GWHALAKL+FFCCGC  +RHF++ +   GHF K SRFSKT
Sbjct: 69  RAPRMVTALATGAPNGRLGGGWHALAKLMFFCCGCESTRHFRVSRPSPGHFVKESRFSKT 128

Query: 664 SGQSFLMKRCQSDLLYISDPCEHTVEGSFEDLGVFRGVFRGFMKSKTRDLLIGRKAEFEE 485
           SG+SFL K+C  DLLY+SDPCEH +    +DLG++RGVFRGFM+SKTR  LI R+ + EE
Sbjct: 129 SGRSFLTKKCSGDLLYVSDPCEHPMGEREDDLGIYRGVFRGFMRSKTRACLIRRQVKLEE 188

Query: 484 LIRCPYCGARVWSMTTAKLVPKSAAKRLGSHHEKLEYFVCVNGHVHGSCLLVP 326
            + CPYCGARVWSMT A+LVPKSAA+RLG+H   LEYFVC+NGH+HG+C LVP
Sbjct: 189 RVCCPYCGARVWSMTAARLVPKSAARRLGTHDGGLEYFVCLNGHLHGTCWLVP 241


>ref|XP_002533076.1| conserved hypothetical protein [Ricinus communis]
           gi|223527140|gb|EEF29315.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 279

 Score =  249 bits (637), Expect = 4e-64
 Identities = 110/173 (63%), Positives = 140/173 (80%)
 Frame = -2

Query: 844 RAPRMVPTLVNGEPNLRVGDGWHALAKLLFFCCGCVPSRHFKIDQTLLGHFSKTSRFSKT 665
           RAPRM+ +L NG PN   GD WHA+AKL+F+CCGC  +++FK+ Q   GHF +TSRFSKT
Sbjct: 69  RAPRMLASLTNGAPNAPFGDSWHAIAKLMFYCCGCESTQNFKVSQPSPGHFIETSRFSKT 128

Query: 664 SGQSFLMKRCQSDLLYISDPCEHTVEGSFEDLGVFRGVFRGFMKSKTRDLLIGRKAEFEE 485
           SGQSFL K+C+ DLLY+SDPCEH+   + +DLG++RGVF+GFMKS+TR  LI R+ E E+
Sbjct: 129 SGQSFLNKKCRGDLLYVSDPCEHSASNNEDDLGIYRGVFKGFMKSRTRACLIRRQVELEK 188

Query: 484 LIRCPYCGARVWSMTTAKLVPKSAAKRLGSHHEKLEYFVCVNGHVHGSCLLVP 326
             RCPYCG RVWSMT+A+LVPK+AA+RLGS  + LEYFVC+NGH++G C LVP
Sbjct: 189 RTRCPYCGFRVWSMTSARLVPKTAARRLGSREDGLEYFVCLNGHLYGCCWLVP 241


>gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Nicotiana tabacum]
          Length = 291

 Score =  247 bits (631), Expect = 2e-63
 Identities = 112/173 (64%), Positives = 139/173 (80%)
 Frame = -2

Query: 844 RAPRMVPTLVNGEPNLRVGDGWHALAKLLFFCCGCVPSRHFKIDQTLLGHFSKTSRFSKT 665
           RAP+M+  L +G P+ R+G GW A+AKL+FFC GC  SRHF++ +   GHF KTSRFSKT
Sbjct: 71  RAPQMITALTDGSPSGRIGGGWQAMAKLMFFCNGCRSSRHFQVGEPAPGHFVKTSRFSKT 130

Query: 664 SGQSFLMKRCQSDLLYISDPCEHTVEGSFEDLGVFRGVFRGFMKSKTRDLLIGRKAEFEE 485
           SG+SFL+K+C++DLLY+SDPCEH      +DLG+FRGVF GFM+S+TR  LI R+ E EE
Sbjct: 131 SGRSFLVKKCRNDLLYVSDPCEHPTGDKDDDLGIFRGVFWGFMRSRTRACLIRRQVELEE 190

Query: 484 LIRCPYCGARVWSMTTAKLVPKSAAKRLGSHHEKLEYFVCVNGHVHGSCLLVP 326
            I+CP+CGARVWSMT A+LVPKSAA+RLGS    LEYFVCVNGH+HG+C LVP
Sbjct: 191 KIKCPFCGARVWSMTAARLVPKSAARRLGSMESGLEYFVCVNGHLHGACWLVP 243