BLASTX nr result

ID: Coptis25_contig00042338 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042338
         (647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321800.1| predicted protein [Populus trichocarpa] gi|2...    61   2e-07
ref|XP_002332302.1| predicted protein [Populus trichocarpa] gi|2...    56   7e-06
ref|XP_002332133.1| predicted protein [Populus trichocarpa] gi|2...    55   9e-06

>ref|XP_002321800.1| predicted protein [Populus trichocarpa] gi|222868796|gb|EEF05927.1|
           predicted protein [Populus trichocarpa]
          Length = 267

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
 Frame = +1

Query: 4   CSNLKNGLLKSSVLNDIMIFVDAIDEIPFAKPIPRRG--KCKRMDFDVRGDQV-LRFSHF 174
           CS+   GLL+S V  DI  FV+  DEIPFAKPIPR      +R    +  D++  R  H 
Sbjct: 119 CSSGGIGLLRSGVFKDIKSFVEFSDEIPFAKPIPRGNSISLRRNSIPLEIDELDSRGLHI 178

Query: 175 PTWVPRLPDLSTYKD 219
           P W+PR PD ++YK+
Sbjct: 179 PRWLPRFPDETSYKN 193


>ref|XP_002332302.1| predicted protein [Populus trichocarpa] gi|222832464|gb|EEE70941.1|
           predicted protein [Populus trichocarpa]
          Length = 265

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = +1

Query: 4   CSNLKNGLLKSSVLNDIMIFVDAIDEIPFAKPIPR------RGKCKRMDFDVRGDQVLRF 165
           C++    LL+SSV  +I  FV+  DEIPFAKPIPR      R     ++ +  G + L  
Sbjct: 109 CNSSGMSLLRSSVFKNIKSFVEFSDEIPFAKPIPRGESISLRRNSIPLELNKLGSRGL-- 166

Query: 166 SHFPTWVPRLPDLSTYKDVDVKVCREEMFGVVVEEKN 276
            H P W+PR PD S+Y     +  ++    +V+ EK+
Sbjct: 167 -HIPRWLPRCPDESSYNKCGDRCEKKRKGELVLWEKS 202


>ref|XP_002332133.1| predicted protein [Populus trichocarpa] gi|222875183|gb|EEF12314.1|
           predicted protein [Populus trichocarpa]
          Length = 218

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = +1

Query: 4   CSNLKNGLLKSSVLNDIMIFVDAIDEIPFAKPIPR------RGKCKRMDFDVRGDQVLRF 165
           C++    LL+SSV  +I  FV+  DEIPFAKPIPR      R     ++ +  G + L  
Sbjct: 85  CNSSGMSLLRSSVFKNIKSFVEFSDEIPFAKPIPRGESISLRRNSIPLELNKLGSRGL-- 142

Query: 166 SHFPTWVPRLPDLSTYKDVDVKVCREEMFGVVVEEKN 276
            H P W+PR PD S+Y     +  ++    +V+ EK+
Sbjct: 143 -HIPRWLPRCPDESSYNKCADRCEKKRKGELVLWEKS 178


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