BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042334
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...    96   3e-18
gb|AAL75999.1|AF466646_7 putative polyprotein [Zea mays]               93   2e-17
emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa Japonica Group]         92   3e-17
ref|NP_001052635.1| Os04g0389000 [Oryza sativa Japonica Group] g...    92   3e-17
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    92   4e-17

>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
            finger, CCHC-type; Peptidase aspartic, active site;
            Polynucleotidyl transferase, Ribonuclease H fold
            [Medicago truncatula]
          Length = 1297

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 39/81 (48%), Positives = 59/81 (72%)
 Frame = -1

Query: 245  REWSKWLSWAEYCYNTSWHSATKTIPFQVVYGRPPPTLLSYISGMTVVDSVERQLMDRDQ 66
            + W+ W+ WAEY +NTS+H+AT   PF++VYGRPPP +  ++ G T V++V+R+L+DRD+
Sbjct: 1055 KNWASWIPWAEYWFNTSYHAATGHTPFEMVYGRPPPVITRWVQGETRVEAVQRELLDRDE 1114

Query: 65   IIKDLQTTFKEAQSRMKKIYD 3
             +K L+     AQ RMK+I D
Sbjct: 1115 ALKQLREQLLRAQVRMKQIAD 1135


>gb|AAL75999.1|AF466646_7 putative polyprotein [Zea mays]
          Length = 2749

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 40/81 (49%), Positives = 53/81 (65%)
 Frame = -1

Query: 245  REWSKWLSWAEYCYNTSWHSATKTIPFQVVYGRPPPTLLSYISGMTVVDSVERQLMDRDQ 66
            R W  WLSWAEYCYNTS+H+A +  PF+VVYGRPPP +L Y +G     + E  L DRD 
Sbjct: 1615 RAWVDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILPYQAGSARTAAAEELLRDRDN 1674

Query: 65   IIKDLQTTFKEAQSRMKKIYD 3
            I+ +++    +AQ   K+ YD
Sbjct: 1675 ILAEVRQRLVQAQQLSKRYYD 1695


>emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa Japonica Group]
          Length = 582

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 38/81 (46%), Positives = 57/81 (70%)
 Frame = -1

Query: 245 REWSKWLSWAEYCYNTSWHSATKTIPFQVVYGRPPPTLLSYISGMTVVDSVERQLMDRDQ 66
           R W +WL WAEYCYNTS+ S+ +T PF+VVYGR PPTL +Y  G T + +V++ + DRD+
Sbjct: 321 RHWLRWLPWAEYCYNTSYQSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDE 380

Query: 65  IIKDLQTTFKEAQSRMKKIYD 3
            +++++   ++AQ   K  YD
Sbjct: 381 FLREIRDRLEQAQQTHKSAYD 401


>ref|NP_001052635.1| Os04g0389000 [Oryza sativa Japonica Group]
           gi|113564206|dbj|BAF14549.1| Os04g0389000, partial
           [Oryza sativa Japonica Group]
          Length = 538

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 38/81 (46%), Positives = 57/81 (70%)
 Frame = -1

Query: 245 REWSKWLSWAEYCYNTSWHSATKTIPFQVVYGRPPPTLLSYISGMTVVDSVERQLMDRDQ 66
           R W +WL WAEYCYNTS+ S+ +T PF+VVYGR PPTL +Y  G T + +V++ + DRD+
Sbjct: 277 RHWLRWLPWAEYCYNTSYQSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDE 336

Query: 65  IIKDLQTTFKEAQSRMKKIYD 3
            +++++   ++AQ   K  YD
Sbjct: 337 FLREIRDRLEQAQQTHKSAYD 357


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/81 (53%), Positives = 53/81 (65%)
 Frame = -1

Query: 245  REWSKWLSWAEYCYNTSWHSATKTIPFQVVYGRPPPTLLSYISGMTVVDSVERQLMDRDQ 66
            R W+KWL WAE+ YNTS H++TK  PF+V+YGR PP ++    G T V+S+E  L DRD 
Sbjct: 1363 RSWAKWLPWAEFSYNTSPHTSTKMSPFKVLYGRDPPHVVRAPKGQTSVESLEAMLQDRDA 1422

Query: 65   IIKDLQTTFKEAQSRMKKIYD 3
            II DLQ     AQ RMK   D
Sbjct: 1423 IIDDLQVNLVRAQQRMKHYAD 1443