BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042317
         (527 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...   111   6e-23
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...    98   7e-19
ref|XP_002517091.1| pentatricopeptide repeat-containing protein,...    94   2e-17
ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13

>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score =  111 bits (278), Expect = 6e-23
 Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 29/200 (14%)
 Frame = +1

Query: 13  NVTFQTNSNTKIRLILKTDK--TPSLKLTIYPLHLKMS------HFKQIQAVIIRTCLIP 168
           ++TFQ+          K  K  +P+  +  +P+ L M         KQIQA + +T LI 
Sbjct: 21  SLTFQSLKQFSSTTTTKPTKWNSPTNTIITHPILLAMESCTSMLQLKQIQAHMTKTALIS 80

Query: 169 HT--------------------TNLLSITSQN-NLYIYNTIVKHYSKSKQSKVSIFLFRE 285
           HT                     +LL    QN N YI+NT+++ YSK+K  +     F +
Sbjct: 81  HTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQ 140

Query: 286 MVRKHLEMNKQTFVFTIKACELFKGGVIVNEEIHCIVCKLGFDSELVLRNVLMHFYGKYG 465
           MV+K +EM+ ++FVF +KACE F  GV+  + +HC+V K+GF   L+++N L+HFYG  G
Sbjct: 141 MVQKGVEMDCRSFVFALKACEQFL-GVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRG 199

Query: 466 FLSSAKLLFDESVVKDVFTW 525
            L  A+L+FDE   +DV +W
Sbjct: 200 CLGLARLVFDEISERDVVSW 219


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 1024

 Score = 98.2 bits (243), Expect = 7e-19
 Identities = 48/133 (36%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
 Frame = +1

Query: 145 IIRTCLIPHTTNL------LSITSQNNLYIYNTIVKHYSKSKQSKVSIFLFREMVRKHLE 306
           +I  C + H+ +L       +   Q N +++NT+++ Y  +++   +   F  M +  +E
Sbjct: 195 VIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVE 254

Query: 307 MNKQTFVFTIKACELFKGGVIVNEEIHCIVCKLGFDSELVLRNVLMHFYGKYGFLSSAKL 486
           M+ ++FVF +KAC+ F+  V   E ++C+V K+GFD EL++RN L+HFY + G L +A+ 
Sbjct: 255 MDSRSFVFALKACQQFET-VFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQ 313

Query: 487 LFDESVVKDVFTW 525
           +FDES  KDV TW
Sbjct: 314 VFDESSDKDVVTW 326


>ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543726|gb|EEF45254.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 21/158 (13%)
 Frame = +1

Query: 115 MSHFKQIQAVIIRTCLIPHTTNLLSITS---------------------QNNLYIYNTIV 231
           M   KQIQA +I T LI HT  +  + +                       N YI+NT++
Sbjct: 171 MIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMI 230

Query: 232 KHYSKSKQSKVSIFLFREMVRKHLEMNKQTFVFTIKACELFKGGVIVNEEIHCIVCKLGF 411
           + +S +K   + +  F +MVR+ +EM+ ++FVF +KA E F    +  E IHC + K+GF
Sbjct: 231 RGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTA-LEGESIHCAIWKIGF 289

Query: 412 DSELVLRNVLMHFYGKYGFLSSAKLLFDESVVKDVFTW 525
              L+++N L+HFY  +G L  A+ +FDE+  +DV +W
Sbjct: 290 PCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSW 327


>ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 44/111 (39%), Positives = 65/111 (58%)
 Frame = +1

Query: 193 TSQNNLYIYNTIVKHYSKSKQSKVSIFLFREMVRKHLEMNKQTFVFTIKACELFKGGVIV 372
           T   N + +NT++K Y K+    +    FR+M+R   E +  +FVF +KAC  F    IV
Sbjct: 112 TELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQF-AEKIV 170

Query: 373 NEEIHCIVCKLGFDSELVLRNVLMHFYGKYGFLSSAKLLFDESVVKDVFTW 525
              +H ++ K GFDS+L ++N L+  Y + G L  A+ +FDES VKDV TW
Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTW 221


>ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 IPHTTNLLSITSQNNLYIYNTIVKHYSKSKQSKVSIFLFREMVRKHLEM-NKQTFVFTIK 339
           + H+  L S     NL+++NT+++ YS+S   + +I L+  M+ K +   N  TF F + 
Sbjct: 60  LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119

Query: 340 ACELFKGGVIVNEEIHCIVCKLGFDSELVLRNVLMHFYGKYGFLSSAKLLFDESVVKDVF 519
           +C      +    E+H  + K GF+S+L +RN L+H Y  +G L+ A+ LFDES+V+D+ 
Sbjct: 120 SCARLSS-LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLV 178

Query: 520 TW 525
           ++
Sbjct: 179 SY 180