BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042292
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002442151.1| hypothetical protein SORBIDRAFT_08g015020 [S...    56   3e-13
tpg|DAA54899.1| TPA: hypothetical protein ZEAMMB73_893644 [Zea m...    55   8e-13
gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal h...    50   3e-12
ref|XP_003542329.1| PREDICTED: ubiquitin carboxyl-terminal hydro...    50   3e-12
ref|NP_187797.3| ubiquitin carboxyl-terminal hydrolase 13 [Arabi...    50   3e-12

>ref|XP_002442151.1| hypothetical protein SORBIDRAFT_08g015020 [Sorghum bicolor]
           gi|241942844|gb|EES15989.1| hypothetical protein
           SORBIDRAFT_08g015020 [Sorghum bicolor]
          Length = 1122

 Score = 55.8 bits (133), Expect(2) = 3e-13
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +1

Query: 142 DTLPSRFT*TIKAFSKLNDECYYSQVFTAGGYPWRVLVYPSGS 270
           D   SRFT TI++FS+LN + +YS VF  GGY WRVL++P G+
Sbjct: 56  DPQTSRFTWTIESFSRLNTKKHYSDVFVVGGYKWRVLIFPKGN 98



 Score = 43.5 bits (101), Expect(2) = 3e-13
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 263 VDHFLSVFLDAANSYGQPDGWSRYAGFSFSVVHQMNDR 376
           VDHF S++LD A+S   P GWSRYA FS +VV+Q++ +
Sbjct: 100 VDHF-SMYLDVADSGNLPYGWSRYAQFSLAVVNQIHPK 136


>tpg|DAA54899.1| TPA: hypothetical protein ZEAMMB73_893644 [Zea mays]
          Length = 1122

 Score = 54.7 bits (130), Expect(2) = 8e-13
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = +1

Query: 142 DTLPSRFT*TIKAFSKLNDECYYSQVFTAGGYPWRVLVYPSGS 270
           D   +RFT TI++FS+LN + +YS VF  GGY WRVL++P G+
Sbjct: 56  DPQTTRFTWTIESFSRLNTKKHYSDVFVVGGYKWRVLIFPKGN 98



 Score = 43.5 bits (101), Expect(2) = 8e-13
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 263 VDHFLSVFLDAANSYGQPDGWSRYAGFSFSVVHQMNDR 376
           VDHF S++LD A+S   P GWSRYA FS +VV+Q++ +
Sbjct: 100 VDHF-SMYLDVADSGNLPYGWSRYAQFSLAVVNQIHPK 136


>gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis
           thaliana]
          Length = 1124

 Score = 50.4 bits (119), Expect(2) = 3e-12
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +1

Query: 139 PDTLPS-RFT*TIKAFSKLNDECYYSQVFTAGGYPWRVLVYPSGS 270
           P+  PS +FT TI  F++LN   +YS VF  GGY WR+L++P G+
Sbjct: 57  PEDPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGN 101



 Score = 45.8 bits (107), Expect(2) = 3e-12
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 263 VDHFLSVFLDAANSYGQPDGWSRYAGFSFSVVHQMNDR*SV 385
           VDH LS++LD A++   P GWSRY+ FS +VV+Q+N+R S+
Sbjct: 103 VDH-LSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSI 142


>ref|XP_003542329.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like [Glycine
           max]
          Length = 1118

 Score = 50.4 bits (119), Expect(2) = 3e-12
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +1

Query: 142 DTLPSRFT*TIKAFSKLNDECYYSQVFTAGGYPWRVLVYPSGS 270
           D   SRFT  I  FS+LN +  YS++F  GGY WRVL++P G+
Sbjct: 51  DPPSSRFTWRIDNFSRLNTKKLYSEIFVVGGYKWRVLIFPKGN 93



 Score = 45.8 bits (107), Expect(2) = 3e-12
 Identities = 21/38 (55%), Positives = 30/38 (78%)
 Frame = +2

Query: 272 FLSVFLDAANSYGQPDGWSRYAGFSFSVVHQMNDR*SV 385
           +LS++LD A+S   P GWSRYA FS +VV+QM+++ SV
Sbjct: 97  YLSMYLDVADSASLPYGWSRYAQFSLAVVNQMHNKYSV 134


>ref|NP_187797.3| ubiquitin carboxyl-terminal hydrolase 13 [Arabidopsis thaliana]
           gi|75243459|sp|Q84WU2.1|UBP13_ARATH RecName:
           Full=Ubiquitin carboxyl-terminal hydrolase 13; AltName:
           Full=Deubiquitinating enzyme 13; Short=AtUBP13; AltName:
           Full=Ubiquitin thioesterase 13; AltName:
           Full=Ubiquitin-specific-processing protease 13
           gi|27754270|gb|AAO22588.1| putative ubiquitin
           carboxyl-terminal hydrolase [Arabidopsis thaliana]
           gi|332641595|gb|AEE75116.1| ubiquitin carboxyl-terminal
           hydrolase 13 [Arabidopsis thaliana]
          Length = 1115

 Score = 50.4 bits (119), Expect(2) = 3e-12
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +1

Query: 139 PDTLPS-RFT*TIKAFSKLNDECYYSQVFTAGGYPWRVLVYPSGS 270
           P+  PS +FT TI  F++LN   +YS VF  GGY WR+L++P G+
Sbjct: 48  PEDPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGN 92



 Score = 45.8 bits (107), Expect(2) = 3e-12
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 263 VDHFLSVFLDAANSYGQPDGWSRYAGFSFSVVHQMNDR*SV 385
           VDH LS++LD A++   P GWSRY+ FS +VV+Q+N+R S+
Sbjct: 94  VDH-LSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSI 133