BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042281
         (236 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   131   5e-29
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   125   3e-27
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24

>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  131 bits (330), Expect = 5e-29
 Identities = 62/78 (79%), Positives = 70/78 (89%)
 Frame = +3

Query: 3   ELFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKE 182
           ELF KM  RNV+SWSTMVLGYSK+GDMDMAR++FDKMPVKNLVPWTIMISGYAEKG AK+
Sbjct: 235 ELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKD 294

Query: 183 AFTLYDQMERSGLKPDNG 236
           A  LY+QME +GLK D+G
Sbjct: 295 AINLYNQMEEAGLKFDDG 312


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  125 bits (315), Expect = 3e-27
 Identities = 59/77 (76%), Positives = 68/77 (88%)
 Frame = +3

Query: 6   LFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKEA 185
           LF KM ERNV+SWSTMV GY K+GDM+MARM+FDKMP KNLV WTI+ISG+AEKG AKEA
Sbjct: 242 LFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEA 301

Query: 186 FTLYDQMERSGLKPDNG 236
            TLY+QME +GLKPD+G
Sbjct: 302 TTLYNQMEAAGLKPDDG 318


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  123 bits (308), Expect = 2e-26
 Identities = 56/78 (71%), Positives = 70/78 (89%)
 Frame = +3

Query: 3   ELFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKE 182
           +LF +M ERNV+SWSTMVLGY K+GDM+MARM+FDKMPVKNLV WTI++SG+AEKG A+E
Sbjct: 265 KLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLARE 324

Query: 183 AFTLYDQMERSGLKPDNG 236
           A +L+DQME++ LK DNG
Sbjct: 325 AISLFDQMEKACLKLDNG 342



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 27  RNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKEAFTLYDQM 206
           R+V+SW++M+ G +K G  + AR +FD+MP K+ + W  M+ GY + G   +AF L+D+M
Sbjct: 211 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 270


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  123 bits (308), Expect = 2e-26
 Identities = 56/78 (71%), Positives = 70/78 (89%)
 Frame = +3

Query: 3   ELFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKE 182
           +LF +M ERNV+SWSTMVLGY K+GDM+MARM+FDKMPVKNLV WTI++SG+AEKG A+E
Sbjct: 239 KLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLARE 298

Query: 183 AFTLYDQMERSGLKPDNG 236
           A +L+DQME++ LK DNG
Sbjct: 299 AISLFDQMEKACLKLDNG 316



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 27  RNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKEAFTLYDQM 206
           R+V+SW++M+ G +K G  + AR +FD+MP K+ + W  M+ GY + G   +AF L+D+M
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244


>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
           predicted protein [Populus trichocarpa]
          Length = 427

 Score =  117 bits (293), Expect = 1e-24
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = +3

Query: 6   LFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKEA 185
           LF  M ERNV+SWSTMV GY K+GDM+MARM+FD+MPVKNLV WTI++SGYA KG AK+A
Sbjct: 65  LFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDA 124

Query: 186 FTLYDQMERSGLKPDNG 236
              ++QME +GLKPD+G
Sbjct: 125 IRSFEQMEEAGLKPDDG 141



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 27/67 (40%), Positives = 44/67 (65%)
 Frame = +3

Query: 6   LFGKMHERNVISWSTMVLGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKEA 185
           LF  M ER+V+SW++M+ G  K G++  A  +FD+MP+K+ V W  ++ GY + G   +A
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKA 62

Query: 186 FTLYDQM 206
           F L++ M
Sbjct: 63  FGLFESM 69