BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042268
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    65   8e-09
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    64   1e-08
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    64   2e-08
gb|EEC84753.1| hypothetical protein OsI_31756 [Oryza sativa Indi...    62   4e-08
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    62   5e-08

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 34/102 (33%), Positives = 51/102 (50%)
 Frame = +1

Query: 7    PWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLKDMLDRCTLMHYAPCRKCFSWTNKRDGLA 186
            PW + GDFN+VL   +K GG P  P ++   +D L+   L         FSW   R G  
Sbjct: 736  PWLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPGFSWFAMRHGRV 795

Query: 187  RVAQTIDHLFCNVEWRSLFPNSQLSYVFSQKSDHKVLIFTSN 312
             + + +D    N+ W S  PN+Q+ ++    SDH+ L+  SN
Sbjct: 796  FIKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSN 837


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +1

Query: 7   PWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLKDMLDRCTLMHYAPCRKCFSWTNKRD-GL 183
           PW M GDFN+++   +K GG+  + +  +P   M++ C ++ +      FSW  KR  G+
Sbjct: 130 PWFMIGDFNEIIGNHEKRGGKKRSESSFLPFCCMIENCGMIDFPSTGSLFSWVGKRSCGV 189

Query: 184 A------RVAQTIDHLFCNVEWRSLFPNSQLSYVFSQKSDHKVLI 300
           A       +   +D    N EW S++ ++ + Y+  + SDHK L+
Sbjct: 190 AGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYLQHRGSDHKPLL 234


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/97 (31%), Positives = 50/97 (51%)
 Frame = +1

Query: 10  WAMFGDFNQVLCQEDKVGGRPVTPAKVMPLKDMLDRCTLMHYAPCRKCFSWTNKRDGLAR 189
           W M GDFN++L  E+K+GG     +   P K+M + C ++  A     F+W  +R  L  
Sbjct: 97  WCMVGDFNEILHNEEKIGGPKRCESYFKPFKEMHEACGMVELASTGNRFTWAGRRYDL-W 155

Query: 190 VAQTIDHLFCNVEWRSLFPNSQLSYVFSQKSDHKVLI 300
           +   +D  F N EW   FP S   ++  + SDH+ ++
Sbjct: 156 IQSRLDRAFGNKEWLKNFPASNQQFLEMRGSDHRPVL 192


>gb|EEC84753.1| hypothetical protein OsI_31756 [Oryza sativa Indica Group]
          Length = 1350

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/94 (34%), Positives = 48/94 (51%)
 Frame = +1

Query: 7   PWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLKDMLDRCTLMHYAPCRKCFSWTNKRDGLA 186
           PW + GDFN+VL Q +    RP   +++   +D L  C L          ++ NKR+G  
Sbjct: 372 PWLVMGDFNEVLWQYEHFSKRPRNESQMRAFRDALHSCELHDLGFRGLPHTYDNKREGWN 431

Query: 187 RVAQTIDHLFCNVEWRSLFPNSQLSYVFSQKSDH 288
            V   +D    +  WR +F N+QLS++ S  SDH
Sbjct: 432 NVKVRLDRAVADGNWRDVFSNAQLSHLVSPCSDH 465


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/102 (32%), Positives = 52/102 (50%)
 Frame = +1

Query: 7   PWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLKDMLDRCTLMHYAPCRKCFSWTNKRDGLA 186
           PW + GD N+VL   +K+GGR V   +    KD +    L+        F+WTN R G +
Sbjct: 133 PWLVAGDMNEVLHGNEKMGGRQVGKEQGKQCKDWIAANALLDLGFQGPKFTWTNGRTGGS 192

Query: 187 RVAQTIDHLFCNVEWRSLFPNSQLSYVFSQKSDHKVLIFTSN 312
            + + +D    N EW  LFP++++ ++    SDH  L+   N
Sbjct: 193 LIKERLDRALVNSEWLDLFPDTKVIHLPRTFSDHCPLLILFN 234