BLASTX nr result
ID: Coptis25_contig00042135
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00042135
(601 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR17838.1| unknown [Picea sitchensis] 72 3e-25
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi... 67 5e-25
ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|2... 69 2e-24
ref|XP_002517091.1| pentatricopeptide repeat-containing protein,... 64 3e-23
ref|XP_002524455.1| pentatricopeptide repeat-containing protein,... 59 8e-23
>gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 71.6 bits (174), Expect(3) = 3e-25
Identities = 36/85 (42%), Positives = 53/85 (62%)
Frame = +1
Query: 346 WSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVRMGPVV 525
+SQ+G+ E L LF +M + +K D+ SVL ACA +L G+ IHGY +R G
Sbjct: 398 YSQHGHPHEALALFIEM-QAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFES 456
Query: 526 GLEAETSLLDMYAKCGSLNAAQRVF 600
+ T L+D+YAKCG++N AQ++F
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLF 481
Score = 62.4 bits (150), Expect(3) = 3e-25
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDY--------SIHSFVVKCGFDSIAEVQTAVL 250
L FN M++ KPN +T++SV+PAC + IH + ++ GF+S V A++
Sbjct: 307 LAFFNRMQVRGI--KPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALV 364
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSG 349
NMY K G+V +LF M +K++V+W ++SG
Sbjct: 365 NMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397
Score = 26.9 bits (58), Expect(3) = 3e-25
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 13 QLFDEIPRRDIVVWASMISGY 75
+LF+ +P RD+ W ++I GY
Sbjct: 277 KLFERMPIRDVASWNAIIGGY 297
Score = 54.7 bits (130), Expect(2) = 2e-10
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Frame = +2
Query: 137 KPNWVTVLSVIPACDY--------SIHSFVVKCGFDSIAEVQTAVLNMYVKGGDVVEG*R 292
KP+ ++SV+PAC + IH + ++ GF+S V T ++++Y K G+V +
Sbjct: 420 KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQK 479
Query: 293 LFCEMKEKSLVSWTVMV 343
LF M E+ +VSWT M+
Sbjct: 480 LFERMPEQDVVSWTTMI 496
Score = 36.2 bits (82), Expect(2) = 2e-10
Identities = 11/26 (42%), Positives = 22/26 (84%)
Frame = +1
Query: 10 FQLFDEIPRRDIVVWASMISGYVEHG 87
++LF+ +P++++V W ++ISGY +HG
Sbjct: 377 YKLFERMPKKNVVAWNAIISGYSQHG 402
Score = 51.2 bits (121), Expect(2) = 3e-09
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDY--------SIHSFVVKCGFDSIAEVQTAVL 250
L +F+EM++ + KPN T++SV+P C + IH + ++ G +S V ++
Sbjct: 206 LALFSEMQV--NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSG 349
NMY K G+V +LF M + + SW ++ G
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGG 296
Score = 35.4 bits (80), Expect(2) = 3e-09
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +1
Query: 13 QLFDEIPRRDIVVWASMISGYVEHG 87
Q+FD +P+RD+V W ++I+GY ++G
Sbjct: 176 QVFDRMPKRDVVSWNAIIAGYSQNG 200
Score = 63.5 bits (153), Expect = 3e-08
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +1
Query: 310 REEFSFVDCYGEWSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEM 489
R+ S+ G +S N E L F +M ++ +K ++I SVL ACA L +L G+
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRM-QVRGIKPNSITMVSVLPACAHLFALEQGQQ 343
Query: 490 IHGYVVRMGPVVGLEAETSLLDMYAKCGSLNAAQRVF 600
IHGY +R G +L++MYAKCG++N+A ++F
Sbjct: 344 IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLF 380
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/98 (34%), Positives = 55/98 (56%)
Frame = +1
Query: 307 EREEFSFVDCYGEWSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGE 486
+R+ S+ +SQNG E L LF +M ++ +K ++ SV+ CA L +L G+
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYEALALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGK 241
Query: 487 MIHGYVVRMGPVVGLEAETSLLDMYAKCGSLNAAQRVF 600
IH Y +R G + L++MYAKCG++N A ++F
Sbjct: 242 QIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF 279
>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 67.4 bits (163), Expect(3) = 5e-25
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +1
Query: 346 WSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVRMGPVV 525
+ Q G E L LF+++ K D + S L ACAQLG+++ G IH Y+ + G +
Sbjct: 344 YEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL 403
Query: 526 GLEAETSLLDMYAKCGSLNAAQRVF 600
TSL+DMY KCG L A VF
Sbjct: 404 NCHLTTSLIDMYCKCGDLQKALMVF 428
Score = 55.8 bits (133), Expect(3) = 5e-25
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPAC----DYS----IHSFVVKCGFDSIAEVQTAVL 250
L +F EM + KPN +T++ V+ AC D+ +HS++ + + A+L
Sbjct: 222 LELFQEMET--QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAML 279
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSG 349
+MY K G V + RLF +M EK +VSWT M+ G
Sbjct: 280 DMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 312
Score = 37.0 bits (84), Expect(3) = 5e-25
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 4 MGFQLFDEIPRRDIVVWASMISGYVEHG 87
+G+++F IPRRD+V W SMI+ +V+ G
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGG 216
Score = 57.4 bits (137), Expect(2) = 3e-10
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = +1
Query: 352 QNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVRMGPVVGL 531
Q G E L LF +M + ++K + I VL ACA+ +G +H Y+ R L
Sbjct: 214 QGGCPEEALELFQEM-ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESL 272
Query: 532 EAETSLLDMYAKCGSLNAAQRVF 600
++LDMY KCGS+ A+R+F
Sbjct: 273 TLSNAMLDMYTKCGSVEDAKRLF 295
Score = 32.7 bits (73), Expect(2) = 3e-10
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 185 SIHSFVVKCGFDSIAEVQTAVLNMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVS 346
+ H V+K S + ++++ Y K G++ G R+F + + +VSW M++
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMIT 210
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDYS--------IHSFVVKCGFDSIAEVQTAVL 250
L +F+E++L KP+ VT++S + AC IH ++ K G + T+++
Sbjct: 354 LELFHELQLSKTA-KPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLI 412
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSGRRM 358
+MY K GD+ + +F ++ K + W+ M++G M
Sbjct: 413 DMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAM 448
Score = 34.7 bits (78), Expect(2) = 2e-07
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 13 QLFDEIPRRDIVVWASMISGYVEHGFY 93
+LFD++P +DIV W +M+ GY + G Y
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEY 319
>ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1|
predicted protein [Populus trichocarpa]
Length = 738
Score = 68.9 bits (167), Expect(3) = 2e-24
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +1
Query: 346 WSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVRMGPVV 525
+ QNG E L +F ++ + K + + AS L ACAQLG+++ G IH Y+ + G +
Sbjct: 339 YQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398
Query: 526 GLEAETSLLDMYAKCGSLNAAQRVF 600
TSL+DMY+KCG L A VF
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVF 423
Score = 57.0 bits (136), Expect(3) = 2e-24
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDYSIH--------SFVVKCGFDSIAEVQTAVL 250
L++F M++ ++ +PN VT++ V+ AC I ++ + G D + A+L
Sbjct: 217 LQLFKRMKM--ENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAML 274
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSG 349
+MYVK G + + RLF +M+EK +VSWT M+ G
Sbjct: 275 DMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDG 307
Score = 32.0 bits (71), Expect(3) = 2e-24
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 1 EMGFQLFDEIPRRDIVVWASMISGYVEHG 87
+ + +F +I +DIV W SMISG+V+ G
Sbjct: 183 DSAYLVFSKIVEKDIVSWNSMISGFVQGG 211
Score = 45.4 bits (106), Expect(2) = 7e-07
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDYS--------IHSFVVKCGFDSIAEVQTAVL 250
L +F E++L + + KPN VT+ S + AC IH ++ K G + T+++
Sbjct: 349 LAIFRELQL-NKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLI 407
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSGRRM 358
+MY K G + + +F ++ + + W+ M++G M
Sbjct: 408 DMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443
Score = 33.1 bits (74), Expect(2) = 7e-07
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 13 QLFDEIPRRDIVVWASMISGYVEHGFY 93
+LFD++ +DIV W +MI GY + G Y
Sbjct: 288 RLFDKMEEKDIVSWTTMIDGYAKVGDY 314
Score = 57.8 bits (138), Expect = 1e-06
Identities = 34/98 (34%), Positives = 51/98 (52%)
Frame = +1
Query: 307 EREEFSFVDCYGEWSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGE 486
E++ S+ + Q G E L LF +M KM + + + + VL ACA+ L +G
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRM-KMENARPNRVTMVGVLSACAKRIDLEFGR 252
Query: 487 MIHGYVVRMGPVVGLEAETSLLDMYAKCGSLNAAQRVF 600
Y+ R G + L ++LDMY KCGSL A+R+F
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLF 290
>ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543726|gb|EEF45254.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 606
Score = 57.4 bits (137), Expect(3) = 3e-23
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 346 WSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGY-VVRMGPV 522
+SQN + + LF+ M+ + ++ + VL AC QLG L+ G +IH Y + R
Sbjct: 466 YSQNNQPKKAIVLFHHMVGEGLIPIENTLVC-VLSACGQLGYLDLGRLIHMYHIERKQKG 524
Query: 523 VGLEAETSLLDMYAKCGSLNAAQRVF 600
+ +L+DMYAKCG ++AA RVF
Sbjct: 525 TSVIIANALIDMYAKCGVIDAAARVF 550
Score = 55.8 bits (133), Expect(3) = 3e-23
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +2
Query: 95 LRVFNEMRLGDDDNKPNWVTVLSVIPACDY--------SIHSFVVKCGFDSIAEVQTAVL 250
L++F+ M L D + PN VT++SV+ AC SIH +V + + + A+L
Sbjct: 344 LKLFDSMLLSDVE--PNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAIL 401
Query: 251 NMYVKGGDVVEG*RLFCEMKEKSLVSWTVMVSG 349
+MYVK G +V +F M K + SWT MV+G
Sbjct: 402 DMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNG 434
Score = 40.8 bits (94), Expect(3) = 3e-23
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 13 QLFDEIPRRDIVVWASMISGYVEHGFYVES 102
++FDE P RD+V W SMI GY H +Y ++
Sbjct: 314 KVFDETPARDVVSWTSMIDGYSTHDYYTDA 343
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/97 (36%), Positives = 56/97 (57%)
Frame = +1
Query: 310 REEFSFVDCYGEWSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEM 489
R+ S+ +S + Y ++ L LF ML ++D++ + + SVL AC+Q G L+ G+
Sbjct: 322 RDVVSWTSMIDGYSTHDYYTDALKLFDSML-LSDVEPNEVTMISVLSACSQKGDLSLGKS 380
Query: 490 IHGYVVRMGPVVGLEAETSLLDMYAKCGSLNAAQRVF 600
IH YV R + + ++LDMY KCG L AA+ +F
Sbjct: 381 IHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIF 417
>ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536243|gb|EEF37895.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 486
Score = 59.3 bits (142), Expect(3) = 8e-23
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 370 ETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVR-MGPVVGLEAETS 546
E L LF QML+ ++++ + + S+L ACA LG+L G+ IH Y+ + M + TS
Sbjct: 340 EALGLFRQMLQ-SNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTS 398
Query: 547 LLDMYAKCGSLNAAQRVF 600
L+DMYAKCG++ A ++F
Sbjct: 399 LIDMYAKCGNIEVANQIF 416
Score = 52.8 bits (125), Expect(3) = 8e-23
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Frame = +2
Query: 140 PNWVTVLSVIPACDYS--------IHSFVVKCGFDSIAEVQTAVLNMYVKGGDVVEG*RL 295
PN T+LSV+ AC S + S++ + G +S +V A+++MY K GD+ L
Sbjct: 254 PNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHL 313
Query: 296 FCEMKEKSLVSWTVMVSG 349
F +K K+++SW VM+ G
Sbjct: 314 FEGIKNKNVISWNVMIGG 331
Score = 40.4 bits (93), Expect(3) = 8e-23
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 1 EMGFQLFDEIPRRDIVVWASMISGYVEHGFYVES 102
+ +LFDEIP RD+V W +MI+GY + G + E+
Sbjct: 207 DQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEA 240
Score = 56.2 bits (134), Expect(2) = 2e-12
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 346 WSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSLNYGEMIHGYVVRMGPVV 525
++Q+G E L F +ML+ A++ + SVL ACAQ GSL G + ++ G
Sbjct: 231 YTQSGRFEEALIFFEEMLR-ANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLES 289
Query: 526 GLEAETSLLDMYAKCGSLNAAQRVF 600
++ +L+DMYAKCG L A +F
Sbjct: 290 NIKVMNALIDMYAKCGDLENALHLF 314
Score = 41.6 bits (96), Expect(2) = 2e-12
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 140 PNWVTVLSVIPAC--------DYSIHSFVVKCGFDSIAEVQTAVLNMYVKGGDVVEG*RL 295
PN T V+ +C IH ++K GFD+ A V T+++ MYV+ G++ +
Sbjct: 122 PNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLV 181
Query: 296 FCEMKEKSLVSWTVMVSG 349
F + +VS+T +++G
Sbjct: 182 FERSSMRDVVSYTALITG 199