BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042083
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi...   137   9e-31
ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi...   114   8e-24
ref|XP_002521729.1| pentatricopeptide repeat-containing protein,...   113   1e-23
ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2...   109   3e-22
ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ...   105   3e-21

>ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  137 bits (345), Expect = 9e-31
 Identities = 70/113 (61%), Positives = 87/113 (76%), Gaps = 3/113 (2%)
 Frame = -2

Query: 331 KPCTQSMPNINKSLKLPIF---SKTHLSSLLKFQSRLISSTLVPTHEHISHLILDQNSHT 161
           +  ++SM NI+K  KL +F   S    SS++  QS+ IS+T VPTH+HI+HLIL+Q S +
Sbjct: 49  RKASKSMFNISKYAKLIMFCNVSNIGRSSVVNLQSKPISTTPVPTHQHIAHLILEQKSAS 108

Query: 160 QALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLEEMPGFIGVVP 2
           QALQTFRWAS LPNF HNQ+TYRAL+HKLC FRRF+TVKEVL+EMP  IG  P
Sbjct: 109 QALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDEMPSSIGSPP 161


>ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  114 bits (285), Expect = 8e-24
 Identities = 55/104 (52%), Positives = 73/104 (70%)
 Frame = -2

Query: 313 MPNINKSLKLPIFSKTHLSSLLKFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFRWA 134
           M  + K+   P  S TH     +FQ+   SS+  P+ EH+S LILDQ S ++AL+ FRWA
Sbjct: 1   MRKLWKAFAYPTSSPTHFLRRFQFQTHSSSSS-APSQEHVSQLILDQKSASEALEYFRWA 59

Query: 133 SKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLEEMPGFIGVVP 2
           S +PNF H+Q+TYRAL+HKLC FRRFDTVK++L+EMP  +G  P
Sbjct: 60  STVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPP 103


>ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539120|gb|EEF40716.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 629

 Score =  113 bits (283), Expect = 1e-23
 Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
 Frame = -2

Query: 313 MPNINKSLKLPIFSKTHLSSLLKFQSRLISST---LVPTHEHISHLILDQNSHTQALQTF 143
           MP +   LKL   + + L  + +F+    SST    VP+H+HI+HLILDQNS T+ALQTF
Sbjct: 1   MPKLFPPLKLKA-TASKLLDIFQFRRYSSSSTPSLSVPSHQHIAHLILDQNSATKALQTF 59

Query: 142 RWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLEEMPGFIGVVP 2
           +WAS LP FTH+Q+TYRAL+ KLC F RFDTV ++L+EMP  IG  P
Sbjct: 60  KWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPP 106


>ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score =  109 bits (272), Expect = 3e-22
 Identities = 52/74 (70%), Positives = 59/74 (79%)
 Frame = -2

Query: 223 STLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVK 44
           S  VPTHE I HLILDQ S  QALQTF WASKLPNFTH+Q+TYRAL+HKL  FRRF TV+
Sbjct: 9   SLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQ 68

Query: 43  EVLEEMPGFIGVVP 2
            +L+EMP  IG+ P
Sbjct: 69  HLLDEMPKSIGLPP 82


>ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513709|gb|AES95332.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  105 bits (263), Expect = 3e-21
 Identities = 47/75 (62%), Positives = 60/75 (80%)
 Frame = -2

Query: 226 SSTLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTV 47
           SS+L PT +H+  LILDQ + ++ALQTFRWAS    FTH+Q+TYR L+HKLC+FRRFDTV
Sbjct: 31  SSSLPPTQDHLCQLILDQKTSSEALQTFRWASTFSKFTHSQSTYRTLIHKLCIFRRFDTV 90

Query: 46  KEVLEEMPGFIGVVP 2
           K++L+EMP  IG  P
Sbjct: 91  KQLLDEMPTSIGANP 105