BLASTX nr result

ID: Coptis25_contig00042072 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042072
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513456.1| conserved hypothetical protein [Ricinus comm...    68   7e-10
ref|XP_002283003.2| PREDICTED: uncharacterized protein LOC100248...    66   3e-09
emb|CBI16417.3| unnamed protein product [Vitis vinifera]               66   3e-09
emb|CAN80883.1| hypothetical protein VITISV_018652 [Vitis vinifera]    66   3e-09
ref|XP_002297789.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08

>ref|XP_002513456.1| conserved hypothetical protein [Ricinus communis]
           gi|223547364|gb|EEF48859.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 490

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 3/60 (5%)
 Frame = +1

Query: 85  APPSLISLSNFSP---STPRRLSSQFNNPTRPINSSRRLSWVSLQGRLVNADEASCGEAI 255
           APPS+++LS FSP    + RRLSS F  P+RP+ S+RRL+WVSL+GRLVNA+EAS  +AI
Sbjct: 15  APPSVVTLSPFSPIPVPSSRRLSSHFI-PSRPVPSARRLAWVSLRGRLVNAEEASSAKAI 73


>ref|XP_002283003.2| PREDICTED: uncharacterized protein LOC100248335 [Vitis vinifera]
          Length = 386

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
 Frame = +1

Query: 91  PSLISLSNFSPS---TPRRLSSQFNNPTRPINSSRRLSWVSLQGRLVNADEASCGEAI 255
           P+L+SL  FSPS   +PRRLSS F  P+RP+ ++R+L+WV L+GRLV A+E S   AI
Sbjct: 15  PALVSLLPFSPSVSPSPRRLSSNFTQPSRPVRAARQLAWVDLRGRLVGAEECSSARAI 72


>emb|CBI16417.3| unnamed protein product [Vitis vinifera]
          Length = 422

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
 Frame = +1

Query: 91  PSLISLSNFSPS---TPRRLSSQFNNPTRPINSSRRLSWVSLQGRLVNADEASCGEAI 255
           P+L+SL  FSPS   +PRRLSS F  P+RP+ ++R+L+WV L+GRLV A+E S   AI
Sbjct: 15  PALVSLLPFSPSVSPSPRRLSSNFTQPSRPVRAARQLAWVDLRGRLVGAEECSSARAI 72


>emb|CAN80883.1| hypothetical protein VITISV_018652 [Vitis vinifera]
          Length = 522

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
 Frame = +1

Query: 91  PSLISLSNFSPS---TPRRLSSQFNNPTRPINSSRRLSWVSLQGRLVNADEASCGEAI 255
           P+L+SL  FSPS   +PRRLSS F  P+RP+ ++R+L+WV L+GRLV A+E S   AI
Sbjct: 15  PALVSLLPFSPSVSPSPRRLSSNFTQPSRPVRAARQLAWVDLRGRLVGAEECSSARAI 72


>ref|XP_002297789.1| predicted protein [Populus trichocarpa] gi|222845047|gb|EEE82594.1|
           predicted protein [Populus trichocarpa]
          Length = 380

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 39/67 (58%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
 Frame = +1

Query: 73  ASKHAPPS--LISLSNF----SPSTPRRLSSQFNNPTRPINSSRRLSWVSLQGRLVNADE 234
           +S   PPS   ++LS F    SPS+ RRLSS F  PTR I SS RL+WVSL+GRLVNA+E
Sbjct: 17  SSAQVPPSSSFVTLSPFPPIPSPSSRRRLSSHFT-PTRAITSSLRLAWVSLRGRLVNAEE 75

Query: 235 ASCGEAI 255
           AS   AI
Sbjct: 76  ASSANAI 82


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