BLASTX nr result
ID: Coptis25_contig00041993
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00041993
(308 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19528.1|AF215731_1 Ran GTPase activating protein [Medicago... 41 2e-06
ref|XP_003590647.1| Ran GTPase activating protein [Medicago trun... 39 6e-06
gb|ACJ85571.1| unknown [Medicago truncatula] 39 6e-06
ref|XP_003590648.1| Ran GTPase activating protein [Medicago trun... 39 6e-06
gb|AFK39545.1| unknown [Medicago truncatula] 39 6e-06
>gb|AAF19528.1|AF215731_1 Ran GTPase activating protein [Medicago sativa subsp. x varia]
Length = 533
Score = 40.8 bits (94), Expect(4) = 2e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3
Query: 69 SYLNLEDDGILAIANALNVSAHHLKYWSLEITGNKITDEA 188
SYLNLEDDG A+ANAL SA L+ +L++ GN IT +A
Sbjct: 362 SYLNLEDDGAEALANALKESAPSLE--TLDMAGNDITAKA 399
Score = 25.8 bits (55), Expect(4) = 2e-06
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 253 SENELNDGSAFLIGKALE 306
SENEL D A LI KALE
Sbjct: 419 SENELKDEGAGLISKALE 436
Score = 24.3 bits (51), Expect(4) = 2e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 FGVEAGVAHSRPLSSTADL 57
FGVEAGVA S+ + ADL
Sbjct: 338 FGVEAGVALSKVIPVFADL 356
Score = 23.1 bits (48), Expect(4) = 2e-06
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 209 IVSNQLLTKLNLSE 250
I S Q LTKLNLSE
Sbjct: 407 ISSKQFLTKLNLSE 420
>ref|XP_003590647.1| Ran GTPase activating protein [Medicago truncatula]
gi|355479695|gb|AES60898.1| Ran GTPase activating
protein [Medicago truncatula]
Length = 533
Score = 38.9 bits (89), Expect(4) = 6e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 69 SYLNLEDDGILAIANALNVSAHHLKYWSLEITGNKIT 179
SYLNLEDDG A+ANAL SA L+ L++ GN IT
Sbjct: 362 SYLNLEDDGAEALANALKESAPSLEI--LDMAGNDIT 396
Score = 25.8 bits (55), Expect(4) = 6e-06
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 253 SENELNDGSAFLIGKALE 306
SENEL D A LI KALE
Sbjct: 419 SENELKDEGAGLISKALE 436
Score = 24.3 bits (51), Expect(4) = 6e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 FGVEAGVAHSRPLSSTADL 57
FGVEAGVA S+ + ADL
Sbjct: 338 FGVEAGVALSKVIPVFADL 356
Score = 23.5 bits (49), Expect(4) = 6e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 185 SCAALTASIVSNQLLTKLNLSE 250
+ ++ I S Q LTKLNLSE
Sbjct: 399 TAVSVAECISSKQFLTKLNLSE 420
>gb|ACJ85571.1| unknown [Medicago truncatula]
Length = 533
Score = 38.9 bits (89), Expect(4) = 6e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 69 SYLNLEDDGILAIANALNVSAHHLKYWSLEITGNKIT 179
SYLNLEDDG A+ANAL SA L+ L++ GN IT
Sbjct: 362 SYLNLEDDGAEALANALKESAPSLEI--LDMAGNDIT 396
Score = 25.8 bits (55), Expect(4) = 6e-06
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 253 SENELNDGSAFLIGKALE 306
SENEL D A LI KALE
Sbjct: 419 SENELKDEGAGLISKALE 436
Score = 24.3 bits (51), Expect(4) = 6e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 FGVEAGVAHSRPLSSTADL 57
FGVEAGVA S+ + ADL
Sbjct: 338 FGVEAGVALSKVIPVFADL 356
Score = 23.5 bits (49), Expect(4) = 6e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 185 SCAALTASIVSNQLLTKLNLSE 250
+ ++ I S Q LTKLNLSE
Sbjct: 399 TAVSVAECISSKQFLTKLNLSE 420
>ref|XP_003590648.1| Ran GTPase activating protein [Medicago truncatula]
gi|355479696|gb|AES60899.1| Ran GTPase activating
protein [Medicago truncatula]
Length = 507
Score = 38.9 bits (89), Expect(4) = 6e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 69 SYLNLEDDGILAIANALNVSAHHLKYWSLEITGNKIT 179
SYLNLEDDG A+ANAL SA L+ L++ GN IT
Sbjct: 336 SYLNLEDDGAEALANALKESAPSLEI--LDMAGNDIT 370
Score = 25.8 bits (55), Expect(4) = 6e-06
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 253 SENELNDGSAFLIGKALE 306
SENEL D A LI KALE
Sbjct: 393 SENELKDEGAGLISKALE 410
Score = 24.3 bits (51), Expect(4) = 6e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 FGVEAGVAHSRPLSSTADL 57
FGVEAGVA S+ + ADL
Sbjct: 312 FGVEAGVALSKVIPVFADL 330
Score = 23.5 bits (49), Expect(4) = 6e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 185 SCAALTASIVSNQLLTKLNLSE 250
+ ++ I S Q LTKLNLSE
Sbjct: 373 TAVSVAECISSKQFLTKLNLSE 394
>gb|AFK39545.1| unknown [Medicago truncatula]
Length = 484
Score = 38.9 bits (89), Expect(4) = 6e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 69 SYLNLEDDGILAIANALNVSAHHLKYWSLEITGNKIT 179
SYLNLEDDG A+ANAL SA L+ L++ GN IT
Sbjct: 362 SYLNLEDDGAEALANALKESAPSLEI--LDMAGNDIT 396
Score = 25.8 bits (55), Expect(4) = 6e-06
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 253 SENELNDGSAFLIGKALE 306
SENEL D A LI KALE
Sbjct: 419 SENELKDEGAGLISKALE 436
Score = 24.3 bits (51), Expect(4) = 6e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 FGVEAGVAHSRPLSSTADL 57
FGVEAGVA S+ + ADL
Sbjct: 338 FGVEAGVALSKVIPVFADL 356
Score = 23.5 bits (49), Expect(4) = 6e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 185 SCAALTASIVSNQLLTKLNLSE 250
+ ++ I S Q LTKLNLSE
Sbjct: 399 TAVSVAECISSKQFLTKLNLSE 420