BLASTX nr result

ID: Coptis25_contig00041891 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041891
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containi...   211   7e-53
emb|CBI29560.3| unnamed protein product [Vitis vinifera]              211   7e-53
emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]   211   7e-53
ref|XP_002530602.1| pentatricopeptide repeat-containing protein,...   195   3e-48
ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   189   2e-46

>ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  211 bits (536), Expect = 7e-53
 Identities = 98/132 (74%), Positives = 114/132 (86%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VSWNSMIVAYGQH+EG KAL +FQEM+ R  NVDMFTLA VLTAFTC+ED  GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
           LIK+G H+NSHVGSGL+DLYSKCG G+   +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 38  DALDCFRRMQRV 3
           DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLK-ALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
           V WN+M+  Y Q+ E L+ AL+ F++M    +  +  +  CV++A + +     G Q H+
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
             +KS    N   V + L+ +YSKCG+ +  A+++F+ + E + V  N+MI+GY+Q
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQ 422



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VS+N++I AY    E   AL +F  M     ++D FTL+ V+TA  C +D     Q H+ 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITA--CCDDVGLIGQLHSV 163

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
            + SG      V + L+  Y K GD +  AK+VF  +    D V WN+MI  Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 41  EDALDCFRRMQR 6
           + AL  F+ M R
Sbjct: 223 K-ALGLFQEMVR 233


>emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  211 bits (536), Expect = 7e-53
 Identities = 98/132 (74%), Positives = 114/132 (86%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VSWNSMIVAYGQH+EG KAL +FQEM+ R  NVDMFTLA VLTAFTC+ED  GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
           LIK+G H+NSHVGSGL+DLYSKCG G+   +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 38  DALDCFRRMQRV 3
           DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VS+N++I AY    E   AL +F  M     ++D FTL+ V+TA  C +D     Q H+ 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITA--CCDDVGLIGQLHSV 163

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
            + SG      V + L+  Y K GD +  AK+VF  +    D V WN+MI  Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 41  EDALDCFRRMQR 6
           + AL  F+ M R
Sbjct: 223 K-ALGLFQEMVR 233


>emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  211 bits (536), Expect = 7e-53
 Identities = 98/132 (74%), Positives = 114/132 (86%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VSWNSMIVAYGQH+EG KAL +FQEM+ R  NVDMFTLA VLTAFTC+ED  GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
           LIK+G H+NSHVGSGL+DLYSKCG G+   +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 38  DALDCFRRMQRV 3
           DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLK-ALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
           V WN+M+  Y Q+ E L+ AL+ F++M    +  +  +  CV++A + +     G Q H+
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
             +KS    N   V + L+ +YSKCG+ +  A+++F+ + E + V  N+MI+GY+Q
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQ 422



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VS+N++I AY    E   AL +F  M     ++D FTL+ V+TA  C +D     Q H+ 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITA--CCDDVGLIGQLHSV 163

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
            + SG      V + L+  Y K GD +  AK+VF  +    D V WN+MI  Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 41  EDALDCFRRMQR 6
           + AL  F+ M R
Sbjct: 223 K-ALGLFQEMVR 233


>ref|XP_002530602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529850|gb|EEF31782.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 567

 Score =  195 bits (496), Expect = 3e-48
 Identities = 93/131 (70%), Positives = 108/131 (82%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VSWN+MIVAYG+ REG KAL++FQEM  R  +VDM+TLA VLTAFTC+ED  GG QFHA 
Sbjct: 207 VSWNTMIVAYGRQREGFKALKLFQEMTHRGIDVDMYTLASVLTAFTCLEDLFGGFQFHAN 266

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
           LIK+G + N HVGSGLVDLY+KCG G+L  +K+F EIREPDLVLWNTMIS YS  E+ SE
Sbjct: 267 LIKTGFYRNCHVGSGLVDLYAKCGGGMLDCRKIFVEIREPDLVLWNTMISAYSLDEELSE 326

Query: 38  DALDCFRRMQR 6
           + LDCFRRMQR
Sbjct: 327 ETLDCFRRMQR 337



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHRE-GLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
           V WN+MI AY    E   + L  F+ M    F  D  +  CV+ A + +     G Q HA
Sbjct: 309 VLWNTMISAYSLDEELSEETLDCFRRMQRAGFRPDDCSFVCVIRACSNLSSPSQGKQIHA 368

Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
             +KS    N   V + LV +YSKCG+ +  A+++F+ + E + V +N++I+GY+Q
Sbjct: 369 MTVKSEIPSNQISVNNALVAMYSKCGN-LQDARRLFDRMPEHNTVSFNSIIAGYAQ 423



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           +S+N++I AY    + L AL +F+EM     ++D +TL+ V+TA  C  D     Q H  
Sbjct: 106 ISYNTLITAYADCGDSLNALYLFREMRETGIDMDGYTLSGVITA--CCNDVNLIRQLHCL 163

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFE--EIREPDLVLWNTMISGYSQKEKY 45
               G      V +  V  Y K G  +  A++VF   EI   D V WNTMI  Y  +++ 
Sbjct: 164 AGNYGLDSYVSVKNSFVTYYGKNG-FLEEAERVFYGIEIENRDQVSWNTMIVAYG-RQRE 221

Query: 44  SEDALDCFRRM 12
              AL  F+ M
Sbjct: 222 GFKALKLFQEM 232


>ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  189 bits (480), Expect = 2e-46
 Identities = 92/132 (69%), Positives = 109/132 (82%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VSWNSM+VAY QHREG KAL+++ EM +R   VD+FTLA VLTAFT V+D  GGLQFHAK
Sbjct: 206 VSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAK 265

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
           LIKSG H+NSHVGSGL+DLYSKCG  +L  +KVF+EI  PDLVLWNTMISGYS  E  S+
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 38  DALDCFRRMQRV 3
           +AL+CFR++Q V
Sbjct: 326 EALECFRQLQGV 337



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHRE-GLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
           V WN+MI  Y  + +   +AL+ F+++       D  +L CV++A + +     G Q H 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKY 45
             +K     N   V + L+ +YSKCG+ +  AK +F+ + E + V +N+MI+GY+Q    
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGN-LRDAKTLFDTMPEHNTVSYNSMIAGYAQ-HGM 425

Query: 44  SEDALDCFRRM 12
              +L  F+RM
Sbjct: 426 GFQSLHLFQRM 436



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
 Frame = -2

Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
           VS+N++I AY +  +   A Q+F EM     ++D FTL+ ++TA  C  +     Q HA 
Sbjct: 106 VSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA--CGINVGLIRQLHAL 163

Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREP-DLVLWNTMISGYSQKEKYS 42
            + +G      VG+ L+  YSK G  +  A+++F  + E  D V WN+M+  Y Q  + S
Sbjct: 164 SVVTGLDSYVSVGNALITSYSKNG-FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGS 222

Query: 41  EDALDCFRRM 12
           + AL+ +  M
Sbjct: 223 K-ALELYLEM 231


Top