BLASTX nr result
ID: Coptis25_contig00041891
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00041891
(399 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containi... 211 7e-53
emb|CBI29560.3| unnamed protein product [Vitis vinifera] 211 7e-53
emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera] 211 7e-53
ref|XP_002530602.1| pentatricopeptide repeat-containing protein,... 195 3e-48
ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 189 2e-46
>ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 211 bits (536), Expect = 7e-53
Identities = 98/132 (74%), Positives = 114/132 (86%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VSWNSMIVAYGQH+EG KAL +FQEM+ R NVDMFTLA VLTAFTC+ED GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
LIK+G H+NSHVGSGL+DLYSKCG G+ +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325
Query: 38 DALDCFRRMQRV 3
DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337
Score = 63.5 bits (153), Expect = 2e-08
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLK-ALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
V WN+M+ Y Q+ E L+ AL+ F++M + + + CV++A + + G Q H+
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367
Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
+KS N V + L+ +YSKCG+ + A+++F+ + E + V N+MI+GY+Q
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQ 422
Score = 60.1 bits (144), Expect = 2e-07
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VS+N++I AY E AL +F M ++D FTL+ V+TA C +D Q H+
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITA--CCDDVGLIGQLHSV 163
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
+ SG V + L+ Y K GD + AK+VF + D V WN+MI Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222
Query: 41 EDALDCFRRMQR 6
+ AL F+ M R
Sbjct: 223 K-ALGLFQEMVR 233
>emb|CBI29560.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 211 bits (536), Expect = 7e-53
Identities = 98/132 (74%), Positives = 114/132 (86%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VSWNSMIVAYGQH+EG KAL +FQEM+ R NVDMFTLA VLTAFTC+ED GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
LIK+G H+NSHVGSGL+DLYSKCG G+ +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325
Query: 38 DALDCFRRMQRV 3
DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337
Score = 60.1 bits (144), Expect = 2e-07
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VS+N++I AY E AL +F M ++D FTL+ V+TA C +D Q H+
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITA--CCDDVGLIGQLHSV 163
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
+ SG V + L+ Y K GD + AK+VF + D V WN+MI Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222
Query: 41 EDALDCFRRMQR 6
+ AL F+ M R
Sbjct: 223 K-ALGLFQEMVR 233
>emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 211 bits (536), Expect = 7e-53
Identities = 98/132 (74%), Positives = 114/132 (86%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VSWNSMIVAYGQH+EG KAL +FQEM+ R NVDMFTLA VLTAFTC+ED GGLQFH +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
LIK+G H+NSHVGSGL+DLYSKCG G+ +KVFEEI EPDLVLWNTM+SGYSQ E++ E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325
Query: 38 DALDCFRRMQRV 3
DAL+CFR+MQ +
Sbjct: 326 DALECFRQMQGI 337
Score = 63.5 bits (153), Expect = 2e-08
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLK-ALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
V WN+M+ Y Q+ E L+ AL+ F++M + + + CV++A + + G Q H+
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367
Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
+KS N V + L+ +YSKCG+ + A+++F+ + E + V N+MI+GY+Q
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQ 422
Score = 60.8 bits (146), Expect = 1e-07
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VS+N++I AY E AL +F M ++D FTL+ V+TA C +D Q H+
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITA--CCDDVGLIGQLHSV 163
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIRE-PDLVLWNTMISGYSQKEKYS 42
+ SG V + L+ Y K GD + AK+VF + D V WN+MI Y Q ++ S
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGD-LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222
Query: 41 EDALDCFRRMQR 6
+ AL F+ M R
Sbjct: 223 K-ALGLFQEMVR 233
>ref|XP_002530602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529850|gb|EEF31782.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 567
Score = 195 bits (496), Expect = 3e-48
Identities = 93/131 (70%), Positives = 108/131 (82%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VSWN+MIVAYG+ REG KAL++FQEM R +VDM+TLA VLTAFTC+ED GG QFHA
Sbjct: 207 VSWNTMIVAYGRQREGFKALKLFQEMTHRGIDVDMYTLASVLTAFTCLEDLFGGFQFHAN 266
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
LIK+G + N HVGSGLVDLY+KCG G+L +K+F EIREPDLVLWNTMIS YS E+ SE
Sbjct: 267 LIKTGFYRNCHVGSGLVDLYAKCGGGMLDCRKIFVEIREPDLVLWNTMISAYSLDEELSE 326
Query: 38 DALDCFRRMQR 6
+ LDCFRRMQR
Sbjct: 327 ETLDCFRRMQR 337
Score = 63.2 bits (152), Expect = 2e-08
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Frame = -2
Query: 398 VSWNSMIVAYGQHRE-GLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
V WN+MI AY E + L F+ M F D + CV+ A + + G Q HA
Sbjct: 309 VLWNTMISAYSLDEELSEETLDCFRRMQRAGFRPDDCSFVCVIRACSNLSSPSQGKQIHA 368
Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQ 57
+KS N V + LV +YSKCG+ + A+++F+ + E + V +N++I+GY+Q
Sbjct: 369 MTVKSEIPSNQISVNNALVAMYSKCGN-LQDARRLFDRMPEHNTVSFNSIIAGYAQ 423
Score = 55.5 bits (132), Expect = 5e-06
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
+S+N++I AY + L AL +F+EM ++D +TL+ V+TA C D Q H
Sbjct: 106 ISYNTLITAYADCGDSLNALYLFREMRETGIDMDGYTLSGVITA--CCNDVNLIRQLHCL 163
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFE--EIREPDLVLWNTMISGYSQKEKY 45
G V + V Y K G + A++VF EI D V WNTMI Y +++
Sbjct: 164 AGNYGLDSYVSVKNSFVTYYGKNG-FLEEAERVFYGIEIENRDQVSWNTMIVAYG-RQRE 221
Query: 44 SEDALDCFRRM 12
AL F+ M
Sbjct: 222 GFKALKLFQEM 232
>ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49710-like [Cucumis sativus]
Length = 720
Score = 189 bits (480), Expect = 2e-46
Identities = 92/132 (69%), Positives = 109/132 (82%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VSWNSM+VAY QHREG KAL+++ EM +R VD+FTLA VLTAFT V+D GGLQFHAK
Sbjct: 206 VSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAK 265
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKYSE 39
LIKSG H+NSHVGSGL+DLYSKCG +L +KVF+EI PDLVLWNTMISGYS E S+
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325
Query: 38 DALDCFRRMQRV 3
+AL+CFR++Q V
Sbjct: 326 EALECFRQLQGV 337
Score = 58.2 bits (139), Expect = 7e-07
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Frame = -2
Query: 398 VSWNSMIVAYGQHRE-GLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHA 222
V WN+MI Y + + +AL+ F+++ D +L CV++A + + G Q H
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367
Query: 221 KLIKSGCHENS-HVGSGLVDLYSKCGDGVLGAKKVFEEIREPDLVLWNTMISGYSQKEKY 45
+K N V + L+ +YSKCG+ + AK +F+ + E + V +N+MI+GY+Q
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGN-LRDAKTLFDTMPEHNTVSYNSMIAGYAQ-HGM 425
Query: 44 SEDALDCFRRM 12
+L F+RM
Sbjct: 426 GFQSLHLFQRM 436
Score = 57.0 bits (136), Expect = 2e-06
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = -2
Query: 398 VSWNSMIVAYGQHREGLKALQVFQEMILRDFNVDMFTLACVLTAFTCVEDFRGGLQFHAK 219
VS+N++I AY + + A Q+F EM ++D FTL+ ++TA C + Q HA
Sbjct: 106 VSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA--CGINVGLIRQLHAL 163
Query: 218 LIKSGCHENSHVGSGLVDLYSKCGDGVLGAKKVFEEIREP-DLVLWNTMISGYSQKEKYS 42
+ +G VG+ L+ YSK G + A+++F + E D V WN+M+ Y Q + S
Sbjct: 164 SVVTGLDSYVSVGNALITSYSKNG-FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGS 222
Query: 41 EDALDCFRRM 12
+ AL+ + M
Sbjct: 223 K-ALELYLEM 231