BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041884
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat...   165   4e-39
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,...   157   9e-37
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ...   148   4e-34
ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat...   148   5e-34
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2...   147   7e-34

>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score =  165 bits (417), Expect = 4e-39
 Identities = 76/138 (55%), Positives = 100/138 (72%)
 Frame = +3

Query: 75   FNFGVMEQSKADVQPTQPLQVLYCNHDLEEICWILLSHVCWSSMQEALERCTVPFSPDLV 254
            FNF  +E  + D+   + L   Y   DL+EIC IL + + W  ++EALE+CTV F+  LV
Sbjct: 607  FNFNQLESGRMDLHLVEHLPKTYNEQDLQEICRILSTSMDWCLIEEALEKCTVQFTSQLV 666

Query: 255  LEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISGCAKDFTHMRNLYLEMKRR 434
            +E+L  C L+GHAAL FF+W+GK+  Y+H TETYNM IKISGC+K+F  MRNL+ EM+R+
Sbjct: 667  VEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRK 726

Query: 435  GCLITSDTWTIMIMQYGR 488
            G  +T DTWTIMIMQYGR
Sbjct: 727  GHPVTPDTWTIMIMQYGR 744



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 42/111 (37%), Positives = 62/111 (55%)
 Frame = +3

Query: 156 LEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARY 335
           ++EI  I+ + +   SM+E LE+    F  ++V +VL RC    H AL FF W+  +   
Sbjct: 142 VDEITKIVRADIGTGSMEEKLEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGG 201

Query: 336 NHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGR 488
            H T TYN  + I+G AK+F  +  L  EM+ +GC     TWTI+I  YG+
Sbjct: 202 CHTTRTYNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDIKTWTILISHYGK 252


>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1072

 Score =  157 bits (397), Expect = 9e-37
 Identities = 76/132 (57%), Positives = 93/132 (70%)
 Frame = +3

Query: 93   EQSKADVQPTQPLQVLYCNHDLEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSR 272
            EQ   + Q  +P        DL+EIC IL S   W  MQEALE+CT+ F+P LVLE+L  
Sbjct: 635  EQGLTNCQLAKPHPKSSNEQDLKEICKILSSSKDWCIMQEALEKCTLQFTPGLVLEILHN 694

Query: 273  CQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITS 452
            C ++G+AAL FF+W+G Q  Y H  ETYNMA+KISG  KDF HMR+L+ EM+R+GCLIT 
Sbjct: 695  CSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITP 754

Query: 453  DTWTIMIMQYGR 488
            DTW IMIMQYGR
Sbjct: 755  DTWAIMIMQYGR 766



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/111 (34%), Positives = 62/111 (55%)
 Frame = +3

Query: 156 LEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARY 335
           + EI  I+ +     +M+E LE     F P++V +VL RC    H A  FF+W+  +  +
Sbjct: 147 VREITGIVRAENDLVAMEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGF 206

Query: 336 NHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGR 488
            H T+TY   + I+G AK+F  + +L  EM++  C     TW+I+I Q+G+
Sbjct: 207 CHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGK 257


>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317055|gb|EFH47477.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1029

 Score =  148 bits (374), Expect = 4e-34
 Identities = 72/147 (48%), Positives = 97/147 (65%)
 Frame = +3

Query: 48   YEQPESLQKFNFGVMEQSKADVQPTQPLQVLYCNHDLEEICWILLSHVCWSSMQEALERC 227
            + Q E + K+N   + Q  A      P        D++EIC +L S   W   QEALE+ 
Sbjct: 581  FMQKELVNKYNRPQVVQQSA----LPPASSAVDKMDVQEICHVLSSSRDWERTQEALEKL 636

Query: 228  TVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISGCAKDFTHMR 407
            TV F+P+LV+EVL   ++ G+A L FF+W+GK+  Y HN+E YNM+IK++GC KDF  MR
Sbjct: 637  TVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMR 696

Query: 408  NLYLEMKRRGCLITSDTWTIMIMQYGR 488
            +L+ EM+R+GCLIT DTW IMIMQYGR
Sbjct: 697  SLFYEMRRQGCLITQDTWAIMIMQYGR 723



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/96 (34%), Positives = 52/96 (54%)
 Frame = +3

Query: 201 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 380
           SM++ LE  +  F P++V  VL RC    H A+ FF W+  +  ++H    YN  + I+G
Sbjct: 140 SMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAG 199

Query: 381 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGR 488
            A++   +  L  EM++  C     TWTI+I  YG+
Sbjct: 200 EARNLDMVDELVKEMEKHACDKDIRTWTILISVYGK 235


>ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Cucumis sativus]
           gi|449501176|ref|XP_004161299.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At5g06400,
           mitochondrial-like [Cucumis sativus]
          Length = 1037

 Score =  148 bits (373), Expect = 5e-34
 Identities = 70/116 (60%), Positives = 85/116 (73%)
 Frame = +3

Query: 141 YCNHDLEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMG 320
           Y   DL+ I  IL S   W  +++ALE C+V FSP+LV+E+L +C L G AA +FF W+G
Sbjct: 615 YREEDLDAIYKILSSSTDWKLIKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVG 674

Query: 321 KQARYNHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGR 488
           KQ  YNH TETYNMAIKI+G  KDF HMR+L+ EM+RRGC IT  TWTIMIMQY R
Sbjct: 675 KQPGYNHTTETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYAR 730



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 36/95 (37%), Positives = 51/95 (53%)
 Frame = +3

Query: 201 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 380
           SM+E L    V FS ++V +VL RC  + H AL FF W+  +  +   T  +N  + I+G
Sbjct: 145 SMEERLGNLDVMFSSEIVEKVLKRCFKFPHLALGFFNWVKSRDGFQCTTNVFNTVLSIAG 204

Query: 381 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYG 485
            A+DF  +  L  EM+    L    TWTI+I  YG
Sbjct: 205 EARDFKLIDKLLEEMESYSLLKDIKTWTILISLYG 239


>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
            predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  147 bits (372), Expect = 7e-34
 Identities = 70/131 (53%), Positives = 90/131 (68%)
 Frame = +3

Query: 96   QSKADVQPTQPLQVLYCNHDLEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSRC 275
            Q + D    +PL   Y   DL+E+  IL S   W  +Q+ALE+CT+ F+P+LV E L  C
Sbjct: 613  QGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQDALEKCTIQFTPELVAETLRNC 672

Query: 276  QLYGHAALSFFTWMGKQARYNHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITSD 455
             ++G+AAL FF W+GKQ  +   TETYNMA+K+SG  KDF HMR+L+ EM+RRG LI  D
Sbjct: 673  GMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPD 732

Query: 456  TWTIMIMQYGR 488
            TW IMIMQYGR
Sbjct: 733  TWAIMIMQYGR 743



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/111 (35%), Positives = 63/111 (56%)
 Frame = +3

Query: 156 LEEICWILLSHVCWSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARY 335
           + EI  I+ +  C +SM+E L++      P++V +VL RC    H A  FF W+  +  +
Sbjct: 141 VHEITGIVRAENCTASMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGF 200

Query: 336 NHNTETYNMAIKISGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGR 488
            H T+TYN  +  +G A++F+ +  L  EM++  C     TWTI+I QYG+
Sbjct: 201 CHTTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTILIQQYGK 251