BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041877
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY99339.1| pol-polyprotein [Silene latifolia]                      94   9e-18
emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]    89   4e-16
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              88   6e-16
emb|CAN73691.1| hypothetical protein VITISV_042263 [Vitis vinifera]    88   6e-16
emb|CAN79755.1| hypothetical protein VITISV_006035 [Vitis vinifera]    86   2e-15

>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 52/107 (48%), Positives = 63/107 (58%)
 Frame = +3

Query: 3    GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182
            G EAV+P E V  T RT       N   L   L+LVEE+RD+AR+ L  Y  R++R YN 
Sbjct: 1176 GSEAVLPIEAVVPTFRTATFNPVENEEGLKASLDLVEESRDTARLNLAVYQNRMRRAYNH 1235

Query: 183  RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAGT 323
            RV  R  RVG+LVLR+ T + K    GK+  NWEGPY VVE    GT
Sbjct: 1236 RVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGPYKVVEEMRPGT 1282


>emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]
          Length = 1003

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 46/106 (43%), Positives = 65/106 (61%)
 Frame = +3

Query: 3    GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182
            G++AVIP+E+   T RT A ++      L  +L+  +E R+SA IR+ +Y +R    YN+
Sbjct: 872  GMDAVIPTEIGLPTIRTNAAKQSDANMELGRNLDWTDEVRESAAIRMADYQQRASAHYNR 931

Query: 183  RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAG 320
            +VRPR F+ G LVLR+V  +T E   GK   NWEGPY V + G  G
Sbjct: 932  KVRPRSFKNGTLVLRKVFKNTTEVGAGKFQANWEGPYIVSKAGNNG 977


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
 Frame = +3

Query: 3    GVEAVIPSEM-VAATGRTRA-VEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQY 176
            G+EAV+P+E+ V    RT A + E  N  +L   L+ + E RD A IR++ Y +   R Y
Sbjct: 970  GMEAVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTINERRDQALIRIQNYQQAAARYY 1029

Query: 177  NKRVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEV 308
            N +V+ R F VG+ VLRRV  + KE   GKLG+NWEGPY + EV
Sbjct: 1030 NSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEV 1073


>emb|CAN73691.1| hypothetical protein VITISV_042263 [Vitis vinifera]
          Length = 975

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/107 (42%), Positives = 65/107 (60%)
 Frame = +3

Query: 3    GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182
            G++AVIP+E+   T RT A ++G     L  +L+  +E R+S  IR+ +Y +R    YN+
Sbjct: 844  GMDAVIPTEIGLPTIRTDATKQGDASMELGRNLDWADEVRESTAIRMTDYQQRASAHYNR 903

Query: 183  RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAGT 323
            +VRPR F+ G LVLR+V  +T E   GK   NWEGPY V +    GT
Sbjct: 904  KVRPRSFKNGTLVLRKVFENTTETGTGKFQANWEGPYIVSKSNENGT 950


>emb|CAN79755.1| hypothetical protein VITISV_006035 [Vitis vinifera]
          Length = 665

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/106 (42%), Positives = 65/106 (61%)
 Frame = +3

Query: 3   GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182
           G++AVIP+E+   T RT A ++      L  +L+  +E R+SA IR+ +Y +R    YN+
Sbjct: 534 GMDAVIPTEIGLPTTRTDAAKQKDANTELGRNLDWADEVRESAAIRMADYQQRASAHYNR 593

Query: 183 RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAG 320
           +VRPR+F+ G LVLR+V  +T E   GK   NWEGPY V +    G
Sbjct: 594 KVRPRKFKNGTLVLRKVFENTTEVGAGKFQANWEGPYIVSKANKNG 639