BLASTX nr result
ID: Coptis25_contig00041877
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041877 (323 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAY99339.1| pol-polyprotein [Silene latifolia] 94 9e-18 emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera] 89 4e-16 gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 88 6e-16 emb|CAN73691.1| hypothetical protein VITISV_042263 [Vitis vinifera] 88 6e-16 emb|CAN79755.1| hypothetical protein VITISV_006035 [Vitis vinifera] 86 2e-15 >gb|AAY99339.1| pol-polyprotein [Silene latifolia] Length = 1307 Score = 94.4 bits (233), Expect = 9e-18 Identities = 52/107 (48%), Positives = 63/107 (58%) Frame = +3 Query: 3 GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182 G EAV+P E V T RT N L L+LVEE+RD+AR+ L Y R++R YN Sbjct: 1176 GSEAVLPIEAVVPTFRTATFNPVENEEGLKASLDLVEESRDTARLNLAVYQNRMRRAYNH 1235 Query: 183 RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAGT 323 RV R RVG+LVLR+ T + K GK+ NWEGPY VVE GT Sbjct: 1236 RVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGPYKVVEEMRPGT 1282 >emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera] Length = 1003 Score = 89.0 bits (219), Expect = 4e-16 Identities = 46/106 (43%), Positives = 65/106 (61%) Frame = +3 Query: 3 GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182 G++AVIP+E+ T RT A ++ L +L+ +E R+SA IR+ +Y +R YN+ Sbjct: 872 GMDAVIPTEIGLPTIRTNAAKQSDANMELGRNLDWTDEVRESAAIRMADYQQRASAHYNR 931 Query: 183 RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAG 320 +VRPR F+ G LVLR+V +T E GK NWEGPY V + G G Sbjct: 932 KVRPRSFKNGTLVLRKVFKNTTEVGAGKFQANWEGPYIVSKAGNNG 977 >gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] Length = 1103 Score = 88.2 bits (217), Expect = 6e-16 Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Frame = +3 Query: 3 GVEAVIPSEM-VAATGRTRA-VEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQY 176 G+EAV+P+E+ V RT A + E N +L L+ + E RD A IR++ Y + R Y Sbjct: 970 GMEAVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTINERRDQALIRIQNYQQAAARYY 1029 Query: 177 NKRVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEV 308 N +V+ R F VG+ VLRRV + KE GKLG+NWEGPY + EV Sbjct: 1030 NSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEV 1073 >emb|CAN73691.1| hypothetical protein VITISV_042263 [Vitis vinifera] Length = 975 Score = 88.2 bits (217), Expect = 6e-16 Identities = 46/107 (42%), Positives = 65/107 (60%) Frame = +3 Query: 3 GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182 G++AVIP+E+ T RT A ++G L +L+ +E R+S IR+ +Y +R YN+ Sbjct: 844 GMDAVIPTEIGLPTIRTDATKQGDASMELGRNLDWADEVRESTAIRMTDYQQRASAHYNR 903 Query: 183 RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAGT 323 +VRPR F+ G LVLR+V +T E GK NWEGPY V + GT Sbjct: 904 KVRPRSFKNGTLVLRKVFENTTETGTGKFQANWEGPYIVSKSNENGT 950 >emb|CAN79755.1| hypothetical protein VITISV_006035 [Vitis vinifera] Length = 665 Score = 86.3 bits (212), Expect = 2e-15 Identities = 45/106 (42%), Positives = 65/106 (61%) Frame = +3 Query: 3 GVEAVIPSEMVAATGRTRAVEEGTNWRILAGDLNLVEETRDSARIRLEEYHRRLQRQYNK 182 G++AVIP+E+ T RT A ++ L +L+ +E R+SA IR+ +Y +R YN+ Sbjct: 534 GMDAVIPTEIGLPTTRTDAAKQKDANTELGRNLDWADEVRESAAIRMADYQQRASAHYNR 593 Query: 183 RVRPRRFRVGELVLRRVTPSTKEGKDGKLGLNWEGPYTVVEVGGAG 320 +VRPR+F+ G LVLR+V +T E GK NWEGPY V + G Sbjct: 594 KVRPRKFKNGTLVLRKVFENTTEVGAGKFQANWEGPYIVSKANKNG 639