BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041824
         (779 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   294   2e-77
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...   273   4e-71
ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi...   270   2e-70
ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi...   270   3e-70
ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2...   241   2e-61

>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score =  294 bits (752), Expect = 2e-77
 Identities = 154/282 (54%), Positives = 197/282 (69%), Gaps = 25/282 (8%)
 Frame = -3

Query: 771 VSILKEQRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHD 592
           VSIL+ QRSKSRW+++++L  P GFT  + S+I L IKNNP LAL FF W    SLC H 
Sbjct: 41  VSILRHQRSKSRWSHLQSLF-PKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHT 99

Query: 591 LVSYSTIIHILARARLKTSSQTLMRTVIRVYD--------PLEVFETLVKSYRYCDSAPF 436
           L+SYSTIIHILARARLK+ +  L+RT IRV+D        P ++FE+LVK+Y  C SAPF
Sbjct: 100 LLSYSTIIHILARARLKSQALGLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPF 159

Query: 435 VFDLLVKVCLLGNKIDCAIEIVRMLRSRGICMNITTCNMLIRCVFKLRGCDACLVVYRQV 256
           VFDLL+K CL   +I+ +I IV+MLRSRGI   I+TCN LI  V + RGCDA   +YR+V
Sbjct: 160 VFDLLIKACLNSKRIEQSISIVKMLRSRGISPTISTCNALIWQVSRGRGCDAGYEIYREV 219

Query: 255 F-----------------RDRIMPNVQTMNTLLLCFYQDGIMERVEEIWDEMCKHSMCCC 127
           F                 R R+ PNV T N L++CFY+DG +E+VEEIW EM +    C 
Sbjct: 220 FGSWDDEINEKVRVRVRVRVRVCPNVHTFNALMVCFYRDGGVEKVEEIWAEMGEWD--CN 277

Query: 126 PNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYN 1
           PN YSYSVL+AAFCD+G+MGE  +LW+EMR+K+++ D+MAYN
Sbjct: 278 PNAYSYSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYN 319


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score =  273 bits (697), Expect = 4e-71
 Identities = 147/286 (51%), Positives = 190/286 (66%), Gaps = 27/286 (9%)
 Frame = -3

Query: 777 EVVSILKEQRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCK 598
           + VSIL   RSKSRW+ +++   PNG T  + SEITL IKN P+LALRFF W++  SLC 
Sbjct: 37  DAVSILTHHRSKSRWSNLRSAC-PNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCN 95

Query: 597 HDLVSYSTIIHILARARLKTSSQTLMRTVIRVYD------------PLEVFETLVKSYRY 454
           H+L SYS+IIH+LARARL + +  L+RT IR               PL +FETLVK+YR 
Sbjct: 96  HNLASYSSIIHLLARARLSSHAYDLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRD 155

Query: 453 CDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGICMNITTCNMLIRCVFKLRGCDACL 274
             SAPFVFDLL+K CL   K+D +IEIVRML SRGI   ++T N LI  V K RG D   
Sbjct: 156 SGSAPFVFDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGY 215

Query: 273 VVYRQVFR--------------DRIMPNVQTMNTLLLCFYQDGIMERVEEIWDEM-CKHS 139
            +YR+ FR               R+ PNV T N L+LC YQDG++ERVE+IW EM C + 
Sbjct: 216 AIYREFFRLDEENNEISKRGSGFRVTPNVHTYNDLMLCCYQDGLVERVEKIWIEMKCNYK 275

Query: 138 MCCCPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYN 1
               PN YSYSVL+A FCD+G+MG+A +LW+E+R ++++PDV++YN
Sbjct: 276 ----PNAYSYSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYN 317


>ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  270 bits (691), Expect = 2e-70
 Identities = 139/288 (48%), Positives = 190/288 (65%), Gaps = 30/288 (10%)
 Frame = -3

Query: 774 VVSILKEQRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKH 595
           VVS+L  QRSKSRW ++ +L  PNGF   + S+I L IKNNP LALRFF W+Q  SLC H
Sbjct: 46  VVSVLTHQRSKSRWRFLNSLC-PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNH 104

Query: 594 DLVSYSTIIHILARARLKTSSQTLMRTVIRVYD-----------------PLEVFETLVK 466
           +L+SYST+IHILAR RL+T ++ +++T IR                    PL++FETLVK
Sbjct: 105 NLISYSTLIHILARGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVK 164

Query: 465 SYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGICMNITTCNMLIRCVFKLRGC 286
           +Y+ C SAPFVFDLL+K  L   K+D +IEIVRMLRSRGI   ++T N LI  V K +G 
Sbjct: 165 TYKRCGSAPFVFDLLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLNSLILLVSKCQGA 224

Query: 285 DACLVVYRQVF-------------RDRIMPNVQTMNTLLLCFYQDGIMERVEEIWDEMCK 145
           +    ++R+VF             + R+ PNV T NTL+ CFY+DG + RV+EIWD++  
Sbjct: 225 NVAYAIFREVFGLDCEIEEEHVKLKGRVSPNVHTFNTLMDCFYRDGFVGRVKEIWDQLAD 284

Query: 144 HSMCCCPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYN 1
            +    PN YSYS+L+   C++ + GEA  LW+EM++K+++PDV+AYN
Sbjct: 285 SN--STPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYN 330


>ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
           gi|449472579|ref|XP_004153637.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  270 bits (689), Expect = 3e-70
 Identities = 139/288 (48%), Positives = 189/288 (65%), Gaps = 30/288 (10%)
 Frame = -3

Query: 774 VVSILKEQRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKH 595
           VVS+L  QRSKSRW ++ +L  PNGF   + S+I L IKNNP LALRFF W+Q  SLC H
Sbjct: 46  VVSVLTHQRSKSRWRFLNSLC-PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNH 104

Query: 594 DLVSYSTIIHILARARLKTSSQTLMRTVIRVYD-----------------PLEVFETLVK 466
           +L+SYST+IHILAR RL+T ++ +++T IR                    PL++FETLVK
Sbjct: 105 NLISYSTLIHILARGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVK 164

Query: 465 SYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGICMNITTCNMLIRCVFKLRGC 286
           +Y+ C SAPFVFDLL+K  L   K+D +IEIVRMLRSRGI   ++T N LI  V K +G 
Sbjct: 165 TYKRCGSAPFVFDLLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLNSLILLVSKCQGA 224

Query: 285 DACLVVYRQVF-------------RDRIMPNVQTMNTLLLCFYQDGIMERVEEIWDEMCK 145
           +    ++R+VF             + R+ PNV T NTL+ CFY+DG   RV+EIWD++  
Sbjct: 225 NVAYAIFREVFGLDCEIEEEHVKLKGRVSPNVHTFNTLMDCFYRDGFAGRVKEIWDQLAD 284

Query: 144 HSMCCCPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYN 1
            +    PN YSYS+L+   C++ + GEA  LW+EM++K+++PDV+AYN
Sbjct: 285 SN--STPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYN 330


>ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score =  241 bits (614), Expect = 2e-61
 Identities = 135/281 (48%), Positives = 183/281 (65%), Gaps = 23/281 (8%)
 Frame = -3

Query: 774 VVSILKEQRSKSRWNYIKTLVNPNGFTSK---QVSEITLGIKNNPRLALRFFHWSQKNS- 607
           ++S+L   RSKSRW+++++L+     T       S ITL +K+NP LAL FFH++  NS 
Sbjct: 43  IISLLTHHRSKSRWSHLRSLLTTTTSTPLAPGHFSLITLKLKSNPHLALSFFHFTLHNSS 102

Query: 606 LCKHDLVSYSTIIHILARARLKTSSQTLMRTVIR------VYDPLEVFETLVKSYRYCDS 445
           LC H+L SY+TIIHIL+RARLK  +Q ++R  +R      +   +  FE LVKSYR CDS
Sbjct: 103 LCSHNLRSYATIIHILSRARLKAHAQEIIRAGLRSQILYHLLKEVRFFEVLVKSYRECDS 162

Query: 444 APFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGICMNITTCNMLIRCVFKLRGCDACLVVY 265
           APFVFDLL+K CL   KID +IEIV+MLRS+GI  +I+TCN LI  V + +G      V+
Sbjct: 163 APFVFDLLIKSCLELKKIDGSIEIVKMLRSKGISPSISTCNALISEVSRCKGSFVGYGVF 222

Query: 264 RQVF-------------RDRIMPNVQTMNTLLLCFYQDGIMERVEEIWDEMCKHSMCCCP 124
           ++VF               R+ PNV + N L++ FY++G +E VEEIW EM +    C  
Sbjct: 223 KEVFGLESCELGEKMRRGFRVRPNVHSFNELMVGFYRNGEVEMVEEIWSEMERFG--CVA 280

Query: 123 NVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYN 1
           N +SY VL+A FC+ G++ EA RLWDEMRVK + PDV+AYN
Sbjct: 281 NGFSYGVLIAVFCEGGRLSEAERLWDEMRVKGIMPDVVAYN 321