BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041814
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29860.3| unnamed protein product [Vitis vinifera]              168   4e-40
ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containi...   155   3e-36
ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containi...   154   5e-36
ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containi...   154   5e-36
ref|XP_002529617.1| pentatricopeptide repeat-containing protein,...   152   4e-35

>emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  168 bits (426), Expect = 4e-40
 Identities = 74/133 (55%), Positives = 108/133 (81%)
 Frame = +1

Query: 37  EQQQFLASLLKKCTNMKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHART 216
           E+++ +A L++KC +M+ LRQIH+ +L   +P +  +  LC+I+GFCALSP GDI++AR 
Sbjct: 55  EEEERIALLIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARK 114

Query: 217 VFTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVM 396
           +F+QIQ PNIFS+NSMIRGCSQ Q PSKEPV L+ K+++ GYPNPN++T+AFVLKAC+++
Sbjct: 115 LFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIV 174

Query: 397 LGFKEGWQIHSHV 435
              +EG Q+H++V
Sbjct: 175 SALEEGQQVHANV 187


>ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  155 bits (392), Expect = 3e-36
 Identities = 69/118 (58%), Positives = 96/118 (81%)
 Frame = +1

Query: 82  MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 261
           M+ LRQIH+ +L   +P +  +  LC+I+GFCALSP GDI++AR +F+QIQ PNIFS+NS
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 262 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVMLGFKEGWQIHSHV 435
           MIRGCSQ Q PSKEPV L+ K+++ GYPNPN++T+AFVLKAC+++   +EG Q+H++V
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANV 118


>ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 376

 Score =  154 bits (390), Expect = 5e-36
 Identities = 73/118 (61%), Positives = 93/118 (78%)
 Frame = +1

Query: 82  MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 261
           M+ LRQ+H+H+L  PLP +     L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 262 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVMLGFKEGWQIHSHV 435
           +I+G SQI   SKEP+FL+ KL +TGYP PNS+TLAFVLKACA++  F EG Q+HSHV
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHV 118


>ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  154 bits (390), Expect = 5e-36
 Identities = 73/118 (61%), Positives = 93/118 (78%)
 Frame = +1

Query: 82  MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 261
           M+ LRQ+H+H+L  PLP +     L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 262 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVMLGFKEGWQIHSHV 435
           +I+G SQI   SKEP+FL+ KL +TGYP PNS+TLAFVLKACA++  F EG Q+HSHV
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHV 118


>ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530902|gb|EEF32762.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 438

 Score =  152 bits (383), Expect = 4e-35
 Identities = 69/135 (51%), Positives = 100/135 (74%)
 Frame = +1

Query: 31  EGEQQQFLASLLKKCTNMKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHA 210
           E E+++ +ASL++KC N+ +LRQIH+ +L   LP    + LL +I+ F ALSP GD+N+A
Sbjct: 124 ELEEEKQIASLIQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYA 183

Query: 211 RTVFTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACA 390
           R +F QI NP IF YN++IRGCS  +NPS+EP FLY  ++  G+P  N++T+AFVLKACA
Sbjct: 184 RKIFAQIPNPGIFPYNTIIRGCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACA 243

Query: 391 VMLGFKEGWQIHSHV 435
            ++ F+EG QIH+ +
Sbjct: 244 SIMAFEEGRQIHARI 258