BLASTX nr result
ID: Coptis25_contig00041797
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00041797
(609 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 288 5e-76
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 281 6e-74
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 277 1e-72
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 273 2e-71
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi... 272 4e-71
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 288 bits (737), Expect = 5e-76
Identities = 135/201 (67%), Positives = 166/201 (82%)
Frame = -2
Query: 605 EGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGD 426
E RLF++MP+RD VSWNT+L GYVKAGE++ F+LFEKMP RN VSWSTMV GY K GD
Sbjct: 201 EARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGD 260
Query: 425 MNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAA 246
M+MAR+LFDK P+KNLV WTIMISGYAE+GLAK+A LY++ME+ GL+ D GT SI++A
Sbjct: 261 MDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSA 320
Query: 245 CAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISW 66
CA SGLL LGKR+H S+ER+RF+ T V N L+DMYAKCGSL+ A+ IF GMV KDV+SW
Sbjct: 321 CAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSW 380
Query: 65 NSMLHGLIFHGHGERALELFS 3
N+++ GL HGHGE+AL+LFS
Sbjct: 381 NAIIQGLAMHGHGEKALQLFS 401
Score = 73.9 bits (180), Expect = 2e-11
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 45/241 (18%)
Frame = -2
Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPE---------------------- 480
LF++MP +++V W ++ GY + G +L+ +M E
Sbjct: 267 LFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGL 326
Query: 479 ------------RNAVSWSTMVSG-----YRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351
R ST VS Y K G + A +F K++V W +I G
Sbjct: 327 LGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQG 386
Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERS----- 186
A G ++A L+ M+ G PD TF ++ AC +G +D G ++ER
Sbjct: 387 LAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPP 446
Query: 185 RFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFHGHGERALEL 9
H +VD+ + G L A + M +E + I W ++L H A E+
Sbjct: 447 EVEH----YGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEV 502
Query: 8 F 6
F
Sbjct: 503 F 503
Score = 72.8 bits (177), Expect = 5e-11
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Frame = -2
Query: 455 MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPD 276
+++ + M +A +F++ +++L+ +I + AF ++ EM+ G+ D
Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114
Query: 275 SGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCG--SLDTAMHI 102
+ T+ ++ AC+ + + + IH VE+ F V N+L+D Y KCG + A +
Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV 174
Query: 101 FDGMVEKDVISWNSMLHGLIFHGHGERALELF 6
F+ M E+D +SWNSM+ GL+ G A LF
Sbjct: 175 FEVMAERDTVSWNSMIGGLVKVGELGEARRLF 206
>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 281 bits (719), Expect = 6e-74
Identities = 128/201 (63%), Positives = 162/201 (80%)
Frame = -2
Query: 605 EGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGD 426
E +LF++MP +D VSWNT+L GYVKAGE+++ F LFE MPERN VSWSTMVSGY K GD
Sbjct: 30 EACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGD 89
Query: 425 MNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAA 246
M MARMLFD+ P+KNLV WTI++SGYA +GLAK+A +++ME+ GL+PD GT SI+A+
Sbjct: 90 MEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILAS 149
Query: 245 CAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISW 66
CAESGLL LGKR+H S+ER R++ V N LVDMYAKCG +D A+ +F+GM +KD++SW
Sbjct: 150 CAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSW 209
Query: 65 NSMLHGLIFHGHGERALELFS 3
N ML GL HGHGE+AL+LFS
Sbjct: 210 NCMLQGLAMHGHGEKALQLFS 230
Score = 75.9 bits (185), Expect = 5e-12
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 45/231 (19%)
Frame = -2
Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------------- 474
LF++MP +++VSW ++ GY G FE+M E
Sbjct: 96 LFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGL 155
Query: 473 ------------------AVSWST-MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351
+V+ S +V Y K G ++ A +F+ K+LV W M+ G
Sbjct: 156 LGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQG 215
Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERS----- 186
A G ++A L+ M + G PD T +++ AC +G +D G R ++ER
Sbjct: 216 LAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVP 275
Query: 185 RFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36
H +VD+ + G L A + M VE +V+ W ++L H
Sbjct: 276 HIEH----YGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 277 bits (708), Expect = 1e-72
Identities = 130/198 (65%), Positives = 160/198 (80%)
Frame = -2
Query: 596 RLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGDMNM 417
+LF++M +RD VSWNT+L GYVKAGE+S+ F+LFEKMPERN VSWSTMVSGY K GDM M
Sbjct: 210 KLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM 269
Query: 416 ARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAE 237
ARMLFDK P KNLV WTI+ISG+AE+GLAKEA LY++ME GL+PD GT SI+AACAE
Sbjct: 270 ARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAE 329
Query: 236 SGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISWNSM 57
SGLL LGK++H S+++ R + V N LVDMYAKCG +D A+ IF+ M +D++SWN M
Sbjct: 330 SGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCM 389
Query: 56 LHGLIFHGHGERALELFS 3
L GL HGHGE+A++LFS
Sbjct: 390 LQGLAMHGHGEKAIQLFS 407
Score = 89.7 bits (221), Expect = 4e-16
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Frame = -2
Query: 455 MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPD 276
++S + MN+A +F++ N+ L+ +I + + + +AF + +M+K GL D
Sbjct: 61 LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120
Query: 275 SGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSL--DTAMHI 102
+ T+ ++ AC G L + IH VE+ F V N+L+D Y+KCG L + AM +
Sbjct: 121 NFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKL 180
Query: 101 FDGMVEKDVISWNSMLHGLIFHGHGERALELF 6
F M EKD++SWNSM+ GL+ G RA +LF
Sbjct: 181 FMEMGEKDLVSWNSMIGGLVKAGDLGRARKLF 212
Score = 73.2 bits (178), Expect = 3e-11
Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Frame = -2
Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMP----------------------- 483
LF++MP +++V+W ++ G+ + G L+ +M
Sbjct: 273 LFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL 332
Query: 482 -----------ERNAVSWSTMVSG-----YRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351
++ + S VS Y K G ++ A +F++ +++LV W M+ G
Sbjct: 333 LVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQG 392
Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERSR--FR 177
A G ++A L+ +M++ G +PD T +I+ AC +G +D G S+ER
Sbjct: 393 LAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVP 452
Query: 176 HCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36
H ++D+ + G L+ A + M +E + + W ++L H
Sbjct: 453 HIEHY-GCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVH 499
Score = 55.8 bits (133), Expect = 6e-06
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Frame = -2
Query: 461 STMVSGYRKVG--DMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVG 288
++++ Y K G +N A LF + K+LV W MI G + G A L+DEM
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM---- 215
Query: 287 LEPDSGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAM 108
E D+ ++ +I+ ++G ++ + +L E+ R+ +T+V Y K G ++ A
Sbjct: 216 AERDAVSWNTILDGYVKAG--EMSQAFNL-FEKMPERNVVS-WSTMVSGYCKTGDMEMAR 271
Query: 107 HIFDGMVEKDVISWNSMLHGLIFHGHGERALELFS 3
+FD M K++++W ++ G G + A L++
Sbjct: 272 MLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYN 306
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 273 bits (697), Expect = 2e-71
Identities = 128/199 (64%), Positives = 158/199 (79%), Gaps = 1/199 (0%)
Frame = -2
Query: 596 RLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGDMNM 417
+LF++MP+RD+VSWNT+L GY KAGE+ R F+LFE+MP+RN VSWSTMV GY K GDM+M
Sbjct: 209 KLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDM 268
Query: 416 ARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAE 237
AR+LFD+ P KN+VLWT +I+GYAE+G +EA LY +ME+ GL PD G SI+AACAE
Sbjct: 269 ARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAE 328
Query: 236 SGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMV-EKDVISWNS 60
SG+L LGKRIH S+ R RFR TKV N +DMYAKCG LD A +F GM+ +KDV+SWNS
Sbjct: 329 SGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNS 388
Query: 59 MLHGLIFHGHGERALELFS 3
M+ G HGHGE+ALELFS
Sbjct: 389 MIQGFAMHGHGEKALELFS 407
Score = 83.2 bits (204), Expect = 3e-14
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Frame = -2
Query: 407 LFDKAPIKNLVLWTIMISGYAEQGLAKEA-FLLYDEMEKVGLEPDSGTFTSIIAACAESG 231
+F+ P N+ L+ +I +A F + +M+K GL PD+ T+ ++ AC
Sbjct: 75 VFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPS 134
Query: 230 LLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGS--LDTAMHIFDGMVEKDVISWNSM 57
L L + IH VE+ F V N+L+D Y++CGS LD AM +F M E+DV++WNSM
Sbjct: 135 SLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSM 194
Query: 56 LHGLIFHGHGERALELF 6
+ GL+ G E A +LF
Sbjct: 195 IGGLVRCGELEGACKLF 211
Score = 67.0 bits (162), Expect = 2e-09
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 46/232 (19%)
Frame = -2
Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------AVSWSTM 453
LF++ P +++V W T++ GY + G + +L+ KM E A + S M
Sbjct: 272 LFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGM 331
Query: 452 --------------------------VSGYRKVGDMNMARMLFDKAPIK-NLVLWTIMIS 354
+ Y K G ++ A +F K ++V W MI
Sbjct: 332 LGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQ 391
Query: 353 GYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVER----- 189
G+A G ++A L+ M G EPD+ TF ++ AC +GL++ G++ S+E+
Sbjct: 392 GFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIV 451
Query: 188 SRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36
+ H ++D+ + G L A + M +E + I ++L+ H
Sbjct: 452 PQVEH----YGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMH 499
>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 272 bits (695), Expect = 4e-71
Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 1/203 (0%)
Frame = -2
Query: 608 QEGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVG 429
Q +LF++MP RD+VSWNT+L GY KAGE+ F+LFE+MP RN VSWSTMV GY K G
Sbjct: 205 QGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGG 264
Query: 428 DMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIA 249
DM+MARMLFD+ P+KN+VLWT +I+GYAE+GLA+EA LY +ME+ G+ PD G SI+A
Sbjct: 265 DMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILA 324
Query: 248 ACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMV-EKDVI 72
ACAESG+L LGKRIH S+ R RFR KV N +DMYAKCG LD A +F GM+ +KDV+
Sbjct: 325 ACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVV 384
Query: 71 SWNSMLHGLIFHGHGERALELFS 3
SWNSM+ G HGHGE+ALELFS
Sbjct: 385 SWNSMIQGFAMHGHGEKALELFS 407
Score = 83.2 bits (204), Expect = 3e-14
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Frame = -2
Query: 407 LFDKAPIKNLVLWTIMISGYAEQGLAKEA-FLLYDEMEKVGLEPDSGTFTSIIAACAESG 231
+F+ P N+ L+ +I +A + F + +M+K GL PD+ T+ ++ AC+
Sbjct: 75 VFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPS 134
Query: 230 LLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGS--LDTAMHIFDGMVEKDVISWNSM 57
L L + IH VE+ F V N+L+D Y++CG+ LD AM +F M E+DV++WNSM
Sbjct: 135 SLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSM 194
Query: 56 LHGLIFHGHGERALELF 6
+ GL+ G + A +LF
Sbjct: 195 IGGLVRCGELQGACKLF 211
Score = 66.2 bits (160), Expect = 4e-09
Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Frame = -2
Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------------- 474
LF++ P +++V W T++ GY + G +L+ KM E
Sbjct: 272 LFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGM 331
Query: 473 -------------------AVSWSTMVSGYRKVGDMNMARMLFDKAPIK-NLVLWTIMIS 354
A + + Y K G ++ A +F K ++V W MI
Sbjct: 332 LGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQ 391
Query: 353 GYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVER----- 189
G+A G ++A L+ M + G EPD+ TF ++ AC +GL++ G++ S+E+
Sbjct: 392 GFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIV 451
Query: 188 SRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36
+ H ++D+ + G L A + M +E + I ++L+ H
Sbjct: 452 PQVEH----YGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMH 499