BLASTX nr result
ID: Coptis25_contig00041797
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041797 (609 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 288 5e-76 ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 281 6e-74 ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 277 1e-72 ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 273 2e-71 ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi... 272 4e-71 >ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Vitis vinifera] Length = 594 Score = 288 bits (737), Expect = 5e-76 Identities = 135/201 (67%), Positives = 166/201 (82%) Frame = -2 Query: 605 EGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGD 426 E RLF++MP+RD VSWNT+L GYVKAGE++ F+LFEKMP RN VSWSTMV GY K GD Sbjct: 201 EARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGD 260 Query: 425 MNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAA 246 M+MAR+LFDK P+KNLV WTIMISGYAE+GLAK+A LY++ME+ GL+ D GT SI++A Sbjct: 261 MDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSA 320 Query: 245 CAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISW 66 CA SGLL LGKR+H S+ER+RF+ T V N L+DMYAKCGSL+ A+ IF GMV KDV+SW Sbjct: 321 CAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSW 380 Query: 65 NSMLHGLIFHGHGERALELFS 3 N+++ GL HGHGE+AL+LFS Sbjct: 381 NAIIQGLAMHGHGEKALQLFS 401 Score = 73.9 bits (180), Expect = 2e-11 Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 45/241 (18%) Frame = -2 Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPE---------------------- 480 LF++MP +++V W ++ GY + G +L+ +M E Sbjct: 267 LFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGL 326 Query: 479 ------------RNAVSWSTMVSG-----YRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351 R ST VS Y K G + A +F K++V W +I G Sbjct: 327 LGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQG 386 Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERS----- 186 A G ++A L+ M+ G PD TF ++ AC +G +D G ++ER Sbjct: 387 LAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPP 446 Query: 185 RFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFHGHGERALEL 9 H +VD+ + G L A + M +E + I W ++L H A E+ Sbjct: 447 EVEH----YGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEV 502 Query: 8 F 6 F Sbjct: 503 F 503 Score = 72.8 bits (177), Expect = 5e-11 Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Frame = -2 Query: 455 MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPD 276 +++ + M +A +F++ +++L+ +I + AF ++ EM+ G+ D Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114 Query: 275 SGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCG--SLDTAMHI 102 + T+ ++ AC+ + + + IH VE+ F V N+L+D Y KCG + A + Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV 174 Query: 101 FDGMVEKDVISWNSMLHGLIFHGHGERALELF 6 F+ M E+D +SWNSM+ GL+ G A LF Sbjct: 175 FEVMAERDTVSWNSMIGGLVKVGELGEARRLF 206 >ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa] Length = 427 Score = 281 bits (719), Expect = 6e-74 Identities = 128/201 (63%), Positives = 162/201 (80%) Frame = -2 Query: 605 EGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGD 426 E +LF++MP +D VSWNT+L GYVKAGE+++ F LFE MPERN VSWSTMVSGY K GD Sbjct: 30 EACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGD 89 Query: 425 MNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAA 246 M MARMLFD+ P+KNLV WTI++SGYA +GLAK+A +++ME+ GL+PD GT SI+A+ Sbjct: 90 MEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILAS 149 Query: 245 CAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISW 66 CAESGLL LGKR+H S+ER R++ V N LVDMYAKCG +D A+ +F+GM +KD++SW Sbjct: 150 CAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSW 209 Query: 65 NSMLHGLIFHGHGERALELFS 3 N ML GL HGHGE+AL+LFS Sbjct: 210 NCMLQGLAMHGHGEKALQLFS 230 Score = 75.9 bits (185), Expect = 5e-12 Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 45/231 (19%) Frame = -2 Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------------- 474 LF++MP +++VSW ++ GY G FE+M E Sbjct: 96 LFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGL 155 Query: 473 ------------------AVSWST-MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351 +V+ S +V Y K G ++ A +F+ K+LV W M+ G Sbjct: 156 LGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQG 215 Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERS----- 186 A G ++A L+ M + G PD T +++ AC +G +D G R ++ER Sbjct: 216 LAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVP 275 Query: 185 RFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36 H +VD+ + G L A + M VE +V+ W ++L H Sbjct: 276 HIEH----YGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322 >ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 604 Score = 277 bits (708), Expect = 1e-72 Identities = 130/198 (65%), Positives = 160/198 (80%) Frame = -2 Query: 596 RLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGDMNM 417 +LF++M +RD VSWNT+L GYVKAGE+S+ F+LFEKMPERN VSWSTMVSGY K GDM M Sbjct: 210 KLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM 269 Query: 416 ARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAE 237 ARMLFDK P KNLV WTI+ISG+AE+GLAKEA LY++ME GL+PD GT SI+AACAE Sbjct: 270 ARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAE 329 Query: 236 SGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMVEKDVISWNSM 57 SGLL LGK++H S+++ R + V N LVDMYAKCG +D A+ IF+ M +D++SWN M Sbjct: 330 SGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCM 389 Query: 56 LHGLIFHGHGERALELFS 3 L GL HGHGE+A++LFS Sbjct: 390 LQGLAMHGHGEKAIQLFS 407 Score = 89.7 bits (221), Expect = 4e-16 Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Frame = -2 Query: 455 MVSGYRKVGDMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPD 276 ++S + MN+A +F++ N+ L+ +I + + + +AF + +M+K GL D Sbjct: 61 LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120 Query: 275 SGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSL--DTAMHI 102 + T+ ++ AC G L + IH VE+ F V N+L+D Y+KCG L + AM + Sbjct: 121 NFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKL 180 Query: 101 FDGMVEKDVISWNSMLHGLIFHGHGERALELF 6 F M EKD++SWNSM+ GL+ G RA +LF Sbjct: 181 FMEMGEKDLVSWNSMIGGLVKAGDLGRARKLF 212 Score = 73.2 bits (178), Expect = 3e-11 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 42/228 (18%) Frame = -2 Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMP----------------------- 483 LF++MP +++V+W ++ G+ + G L+ +M Sbjct: 273 LFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL 332 Query: 482 -----------ERNAVSWSTMVSG-----YRKVGDMNMARMLFDKAPIKNLVLWTIMISG 351 ++ + S VS Y K G ++ A +F++ +++LV W M+ G Sbjct: 333 LVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQG 392 Query: 350 YAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVERSR--FR 177 A G ++A L+ +M++ G +PD T +I+ AC +G +D G S+ER Sbjct: 393 LAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVP 452 Query: 176 HCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36 H ++D+ + G L+ A + M +E + + W ++L H Sbjct: 453 HIEHY-GCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVH 499 Score = 55.8 bits (133), Expect = 6e-06 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 2/155 (1%) Frame = -2 Query: 461 STMVSGYRKVG--DMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVG 288 ++++ Y K G +N A LF + K+LV W MI G + G A L+DEM Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM---- 215 Query: 287 LEPDSGTFTSIIAACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAM 108 E D+ ++ +I+ ++G ++ + +L E+ R+ +T+V Y K G ++ A Sbjct: 216 AERDAVSWNTILDGYVKAG--EMSQAFNL-FEKMPERNVVS-WSTMVSGYCKTGDMEMAR 271 Query: 107 HIFDGMVEKDVISWNSMLHGLIFHGHGERALELFS 3 +FD M K++++W ++ G G + A L++ Sbjct: 272 MLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYN 306 >ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] Length = 604 Score = 273 bits (697), Expect = 2e-71 Identities = 128/199 (64%), Positives = 158/199 (79%), Gaps = 1/199 (0%) Frame = -2 Query: 596 RLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVGDMNM 417 +LF++MP+RD+VSWNT+L GY KAGE+ R F+LFE+MP+RN VSWSTMV GY K GDM+M Sbjct: 209 KLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDM 268 Query: 416 ARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAE 237 AR+LFD+ P KN+VLWT +I+GYAE+G +EA LY +ME+ GL PD G SI+AACAE Sbjct: 269 ARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAE 328 Query: 236 SGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMV-EKDVISWNS 60 SG+L LGKRIH S+ R RFR TKV N +DMYAKCG LD A +F GM+ +KDV+SWNS Sbjct: 329 SGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNS 388 Query: 59 MLHGLIFHGHGERALELFS 3 M+ G HGHGE+ALELFS Sbjct: 389 MIQGFAMHGHGEKALELFS 407 Score = 83.2 bits (204), Expect = 3e-14 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%) Frame = -2 Query: 407 LFDKAPIKNLVLWTIMISGYAEQGLAKEA-FLLYDEMEKVGLEPDSGTFTSIIAACAESG 231 +F+ P N+ L+ +I +A F + +M+K GL PD+ T+ ++ AC Sbjct: 75 VFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPS 134 Query: 230 LLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGS--LDTAMHIFDGMVEKDVISWNSM 57 L L + IH VE+ F V N+L+D Y++CGS LD AM +F M E+DV++WNSM Sbjct: 135 SLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSM 194 Query: 56 LHGLIFHGHGERALELF 6 + GL+ G E A +LF Sbjct: 195 IGGLVRCGELEGACKLF 211 Score = 67.0 bits (162), Expect = 2e-09 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 46/232 (19%) Frame = -2 Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------AVSWSTM 453 LF++ P +++V W T++ GY + G + +L+ KM E A + S M Sbjct: 272 LFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGM 331 Query: 452 --------------------------VSGYRKVGDMNMARMLFDKAPIK-NLVLWTIMIS 354 + Y K G ++ A +F K ++V W MI Sbjct: 332 LGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQ 391 Query: 353 GYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVER----- 189 G+A G ++A L+ M G EPD+ TF ++ AC +GL++ G++ S+E+ Sbjct: 392 GFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIV 451 Query: 188 SRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36 + H ++D+ + G L A + M +E + I ++L+ H Sbjct: 452 PQVEH----YGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMH 499 >ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] Length = 604 Score = 272 bits (695), Expect = 4e-71 Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 1/203 (0%) Frame = -2 Query: 608 QEGIRLFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERNAVSWSTMVSGYRKVG 429 Q +LF++MP RD+VSWNT+L GY KAGE+ F+LFE+MP RN VSWSTMV GY K G Sbjct: 205 QGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGG 264 Query: 428 DMNMARMLFDKAPIKNLVLWTIMISGYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIA 249 DM+MARMLFD+ P+KN+VLWT +I+GYAE+GLA+EA LY +ME+ G+ PD G SI+A Sbjct: 265 DMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILA 324 Query: 248 ACAESGLLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGMV-EKDVI 72 ACAESG+L LGKRIH S+ R RFR KV N +DMYAKCG LD A +F GM+ +KDV+ Sbjct: 325 ACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVV 384 Query: 71 SWNSMLHGLIFHGHGERALELFS 3 SWNSM+ G HGHGE+ALELFS Sbjct: 385 SWNSMIQGFAMHGHGEKALELFS 407 Score = 83.2 bits (204), Expect = 3e-14 Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 3/137 (2%) Frame = -2 Query: 407 LFDKAPIKNLVLWTIMISGYAEQGLAKEA-FLLYDEMEKVGLEPDSGTFTSIIAACAESG 231 +F+ P N+ L+ +I +A + F + +M+K GL PD+ T+ ++ AC+ Sbjct: 75 VFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPS 134 Query: 230 LLDLGKRIHLSVERSRFRHCTKVCNTLVDMYAKCGS--LDTAMHIFDGMVEKDVISWNSM 57 L L + IH VE+ F V N+L+D Y++CG+ LD AM +F M E+DV++WNSM Sbjct: 135 SLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSM 194 Query: 56 LHGLIFHGHGERALELF 6 + GL+ G + A +LF Sbjct: 195 IGGLVRCGELQGACKLF 211 Score = 66.2 bits (160), Expect = 4e-09 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 46/232 (19%) Frame = -2 Query: 593 LFEQMPKRDIVSWNTVLGGYVKAGELSRGFDLFEKMPERN-------------------- 474 LF++ P +++V W T++ GY + G +L+ KM E Sbjct: 272 LFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGM 331 Query: 473 -------------------AVSWSTMVSGYRKVGDMNMARMLFDKAPIK-NLVLWTIMIS 354 A + + Y K G ++ A +F K ++V W MI Sbjct: 332 LGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQ 391 Query: 353 GYAEQGLAKEAFLLYDEMEKVGLEPDSGTFTSIIAACAESGLLDLGKRIHLSVER----- 189 G+A G ++A L+ M + G EPD+ TF ++ AC +GL++ G++ S+E+ Sbjct: 392 GFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIV 451 Query: 188 SRFRHCTKVCNTLVDMYAKCGSLDTAMHIFDGM-VEKDVISWNSMLHGLIFH 36 + H ++D+ + G L A + M +E + I ++L+ H Sbjct: 452 PQVEH----YGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMH 499