BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041778
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281077.1| PREDICTED: cytochrome c biogenesis protein C...   115   3e-24
ref|XP_002519098.1| conserved hypothetical protein [Ricinus comm...   109   2e-22
ref|XP_004162745.1| PREDICTED: cytochrome c biogenesis protein C...   100   1e-19
ref|XP_004137133.1| PREDICTED: cytochrome c biogenesis protein C...   100   1e-19
ref|XP_003537900.1| PREDICTED: cytochrome c biogenesis protein C...    92   6e-17

>ref|XP_002281077.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic
           [Vitis vinifera] gi|297741415|emb|CBI32546.3| unnamed
           protein product [Vitis vinifera]
          Length = 557

 Score =  115 bits (289), Expect = 3e-24
 Identities = 61/94 (64%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
 Frame = +3

Query: 27  NKKNVPKKIILSEGAPKLPEDVGNNDDVQPKLISSDGGGVLRF---VKRVPRRALSILSN 197
           + K++ KKI+LSEGAP + ED   N + QPK  S  GGG   F   VKR PR+ LS LSN
Sbjct: 59  SSKSLAKKIVLSEGAPAVSEDGAGNGEAQPKPASKGGGGGGGFGGLVKRFPRKVLSRLSN 118

Query: 198 LPLAIGEMFTIAALMALGTAIDQGEAPGYYFQQY 299
           LPLAIGEMFT+AALMALGTAIDQGEAP YYFQ++
Sbjct: 119 LPLAIGEMFTVAALMALGTAIDQGEAPDYYFQKF 152


>ref|XP_002519098.1| conserved hypothetical protein [Ricinus communis]
           gi|223541761|gb|EEF43309.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 556

 Score =  109 bits (273), Expect = 2e-22
 Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
 Frame = +3

Query: 15  ELKMNKKNVPKKIILSEGAPKLPED--VGNNDDVQPKLISSDGGGVLRFVKRVPRRALSI 188
           E++   KNV +KI+LS  AP + E+   GNN ++ P   +  GGG LRF KR+PR+ LS+
Sbjct: 55  EVENKDKNVSRKILLSNSAPPVSEEGGAGNNGEI-PDKAAKGGGGPLRFFKRLPRKVLSV 113

Query: 189 LSNLPLAIGEMFTIAALMALGTAIDQGEAPGYYFQQY 299
           LSNLPLAIGEMF IA LMALGT IDQG+AP  YFQ Y
Sbjct: 114 LSNLPLAIGEMFAIAGLMALGTVIDQGQAPEIYFQNY 150


>ref|XP_004162745.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like
           [Cucumis sativus]
          Length = 560

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +3

Query: 33  KNVPKKIILSEGAPKLPEDVGNND-DVQPKLISSDGGGVLRFVKRVPRRALSILSNLPLA 209
           KN   KI+LSE AP L E+  +   + + ++   +G   ++ VKR+P+R L  LSNLPLA
Sbjct: 67  KNASNKIVLSEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLA 126

Query: 210 IGEMFTIAALMALGTAIDQGEAPGYYFQQY 299
           IGEMFTIAALMALGT IDQGEAP +YFQ+Y
Sbjct: 127 IGEMFTIAALMALGTVIDQGEAPDFYFQKY 156


>ref|XP_004137133.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like
           [Cucumis sativus]
          Length = 557

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +3

Query: 33  KNVPKKIILSEGAPKLPEDVGNND-DVQPKLISSDGGGVLRFVKRVPRRALSILSNLPLA 209
           KN   KI+LSE AP L E+  +   + + ++   +G   ++ VKR+P+R L  LSNLPLA
Sbjct: 57  KNASNKIVLSEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLA 116

Query: 210 IGEMFTIAALMALGTAIDQGEAPGYYFQQY 299
           IGEMFTIAALMALGT IDQGEAP +YFQ+Y
Sbjct: 117 IGEMFTIAALMALGTVIDQGEAPDFYFQKY 146


>ref|XP_003537900.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like
           [Glycine max]
          Length = 563

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
 Frame = +3

Query: 15  ELKMNKKNVPKKIILSEGAPK-LPEDVGNNDDVQPKLISSDG-GGVLRFVKRVPRRALSI 188
           E+K   K+V +KI+LSE +P  L ED  NN D +    SS   GG+      + R+ L I
Sbjct: 62  EMKNKGKSVSQKIVLSEASPPPLTEDDKNNGDSKDVPESSKKKGGLSGVANMLRRKTLQI 121

Query: 189 LSNLPLAIGEMFTIAALMALGTAIDQGEAPGYYFQQY 299
           LSNLPLAIGEMF +A+LMALGT IDQGEAP +YFQ+Y
Sbjct: 122 LSNLPLAIGEMFAVASLMALGTFIDQGEAPDFYFQKY 158