BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041676
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]   143   2e-32
ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|2...   118   6e-25
ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containi...   117   8e-25
ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-22

>ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera] gi|296088567|emb|CBI37558.3| unnamed
           protein product [Vitis vinifera]
          Length = 492

 Score =  145 bits (365), Expect = 4e-33
 Identities = 72/115 (62%), Positives = 87/115 (75%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRL 170
           D+FT P VFKACAG+ + S LG  LH  V ++G++E+V+VG SVLDFYAKCG L DA+R 
Sbjct: 106 DHFTLPPVFKACAGIGD-SYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRC 164

Query: 169 FVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVCG 5
           FV MS RD+VVWN MI G  +  F  +AL CFR+M  EGVKMDSRT+PSIL VCG
Sbjct: 165 FVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCG 219



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLG-YDEHVIVGCSVLDFYAKCGKLSDAYR 173
           D  T PS+   C G  +    G  +HG V K   +   V +G S++D YAKCG L D+ +
Sbjct: 207 DSRTVPSILSVCGGEGDLM-KGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEK 265

Query: 172 LFVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVC 8
           +F  MS  + V W SMIS +   G   EAL  F++M+  G + +  T+ +IL  C
Sbjct: 266 VFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASC 320



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/89 (30%), Positives = 46/89 (51%)
 Frame = -3

Query: 274 HGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNSMISGFARGGFS 95
           H  +   G+  ++ +   +L  Y+KCG L DA ++F +M  R+   WN +I+ +A   F 
Sbjct: 29  HAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFF 88

Query: 94  VEALGCFREMQEEGVKMDSRTMPSILCVC 8
            +ALG F    + G + D  T+P +   C
Sbjct: 89  YDALGVFDSFLKMGFRPDHFTLPPVFKAC 117


>emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]
          Length = 880

 Score =  143 bits (360), Expect = 2e-32
 Identities = 71/115 (61%), Positives = 86/115 (74%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRL 170
           D+FT P VFKACAG+ + S LG  LH  V ++G++E+V+VG SVLDFY KCG L DA+R 
Sbjct: 536 DHFTLPPVFKACAGIGD-SYLGKMLHSWVIRIGFEEYVVVGSSVLDFYEKCGGLVDAWRC 594

Query: 169 FVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVCG 5
           FV MS RD+VVWN MI G  +  F  +AL CFR+M  EGVKMDSRT+PSIL VCG
Sbjct: 595 FVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCG 649



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/89 (30%), Positives = 46/89 (51%)
 Frame = -3

Query: 274 HGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNSMISGFARGGFS 95
           H  +   G+  ++ +   +L  Y+KCG L DA ++F +M  R+   WN +I+ +A   F 
Sbjct: 459 HAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFF 518

Query: 94  VEALGCFREMQEEGVKMDSRTMPSILCVC 8
            +ALG F    + G + D  T+P +   C
Sbjct: 519 YDALGVFDSFLKMGFRPDHFTLPPVFKAC 547


>ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|222855687|gb|EEE93234.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  118 bits (295), Expect = 6e-25
 Identities = 63/115 (54%), Positives = 77/115 (66%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRL 170
           D++T P +FKA AGV +   LG  LHG V +LG++ +V+VG SVLDFY K GKL +A R+
Sbjct: 106 DHYTLPPLFKAVAGVGD-CYLGFVLHGWVIRLGFEGYVVVGSSVLDFYLKGGKLVEAKRV 164

Query: 169 FVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVCG 5
           F  M  RD  VWN MISGF R GF VEAL   R M EE  K+D+  +PSIL  CG
Sbjct: 165 FSNMLWRDCGVWNLMISGFGRAGFYVEALSLVRNMVEEEEKLDALVVPSILNACG 219



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLG-YDEHVIVGCSVLDFYAKCGKLSDAYR 173
           D    PS+  AC G  +    G  +HG V K   ++  V++  S++D YA+CG L+D+ +
Sbjct: 207 DALVVPSILNACGGEGDLM-KGKEIHGRVVKSTLFNVDVVISNSLIDMYARCGCLNDSEK 265

Query: 172 LFVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVC 8
           +F  M   + V W +MIS +   G + E+L  F++M+  G+K +  T+ ++L  C
Sbjct: 266 VFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFKKMKGFGLKPNPVTLTAVLASC 320


>ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  117 bits (294), Expect = 8e-25
 Identities = 57/115 (49%), Positives = 78/115 (67%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRL 170
           D++T P +FKA  G+ + + LG  LH    KLG+  +V+VG +VLDFYAKCG + DA ++
Sbjct: 107 DHYTLPQMFKASVGIGD-AYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKV 165

Query: 169 FVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVCG 5
           F +M  +DTV WNSMISG+ R G  ++AL CF+ M  EG  MD  T+PS+L  CG
Sbjct: 166 FDDMIFKDTVSWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACG 220



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLG-YDEHVIVGCSVLDFYAKCGKLSDAYR 173
           D+ T PSV  AC G  +    G  +H LV K   +   V VG S++D Y+KCG L ++ +
Sbjct: 208 DFMTIPSVLNACGGEGDLR-KGKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEK 266

Query: 172 LFVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVC 8
           +F  MS  + V W +MIS +   G   ++L  F +M++ G++ +S T+ +IL  C
Sbjct: 267 VFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTLTAILASC 321


>ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 481

 Score =  109 bits (272), Expect = 3e-22
 Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGISLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRL 170
           D++T P +FKA  GV + +C+G   HGLV ++GY+ + IV  S+L+FY K G +  A+ +
Sbjct: 107 DHYTLPPLFKASVGVDD-ACIGSMCHGLVIRIGYEGYAIVANSLLEFYVKFGAMPQAFCV 165

Query: 169 FVEMSVRDTVVWNSMISGFARGGFSVEALGCFREM--QEEGVKMDSRTMPSILCVCGR 2
           F  MS +D+V WN MISGF R G   +A+ CFREM    E +++D  T+PS++  CG+
Sbjct: 166 FSNMSCKDSVTWNLMISGFGRAGLYSDAMHCFREMLSLNEMMRVDFMTLPSVINACGK 223



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
 Frame = -3

Query: 349 DYFTFPSVFKACAGVREFSCLGI-SLHGLVFK-LGYDEHVIVGCSVLDFYAKCGKLSDAY 176
           D+ T PSV  AC   +E   L +  +HG V +  G+D    +G +++D Y KCG L+D+ 
Sbjct: 210 DFMTLPSVINACG--KEGDLLKVREVHGYVVRSFGFDADAAIGNALIDVYCKCGCLNDSE 267

Query: 175 RLFVEMSVRDTVVWNSMISGFARGGFSVEALGCFREMQEEGVKMDSRTMPSILCVCGR 2
           ++F  +   + V W +MIS +   G   E+L  F++M +EG + +  T+ +IL  C R
Sbjct: 268 KIFRTIRHVNLVTWTTMISCYGAHGKGEESLLLFKKMVDEGFRPNPVTLTAILASCSR 325