BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041643
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP43914.1| integrase [Gossypium raimondii]                         62   5e-12
emb|CAN69087.1| hypothetical protein VITISV_031061 [Vitis vinifera]    55   4e-10
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  58   1e-09
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...    53   1e-08
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...    53   1e-08

>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score = 62.4 bits (150), Expect(2) = 5e-12
 Identities = 32/64 (50%), Positives = 42/64 (65%)
 Frame = -2

Query: 281 KLGVQNRVADALSRRSMLLTTMKNEVLGFDLLKDLYATDPYFAPLMDEVQARRNSEFLLH 102
           K G  N VADALSRR  LL+T+  ++LGF+ LKDLYATD  FA + D  +     +F  H
Sbjct: 86  KKGKDNIVADALSRRYTLLSTLHTKLLGFEYLKDLYATDSDFASIYDACEHGAFHKFYKH 145

Query: 101 DGFI 90
           DG++
Sbjct: 146 DGYL 149



 Score = 33.1 bits (74), Expect(2) = 5e-12
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 87  IFEGRRLCIPDCSLRFKIIKELYG---EGHFG 1
           +F+  RLC+P CS+R  +++E +     GHFG
Sbjct: 149 LFQNNRLCLPKCSMRELLVREAHSGGLMGHFG 180


>emb|CAN69087.1| hypothetical protein VITISV_031061 [Vitis vinifera]
          Length = 611

 Score = 55.1 bits (131), Expect(2) = 4e-10
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
 Frame = -2

Query: 281 KLGVQNRVADALSRRSMLLTTMKNEVLGFDLLKDLYATDPYFAPLMDEVQARRN---SEF 111
           K G QNRVADAL RR  LL TM N V+G + +K+ Y  D +F  ++++  A+ +   +E 
Sbjct: 398 KAGSQNRVADALCRRVYLLQTMTNSVVGLEAIKEQYMKDSFFQEVLEKYDAKDSGVLAEL 457

Query: 110 LLHDGFI 90
           + +DG++
Sbjct: 458 VFNDGYL 464



 Score = 33.9 bits (76), Expect(2) = 4e-10
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
 Frame = -1

Query: 87  IFEGRRLCIPDCSLRFKIIKELYG---EGHFG 1
           +F+G RLCIP+ SL+  +I EL+G    GHFG
Sbjct: 464 LFKGVRLCIPEGSLKELLIGELHGGGLGGHFG 495


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 57.8 bits (138), Expect(2) = 1e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
 Frame = -2

Query: 281  KLGVQNRVADALSRRSMLLTTMKNEVLGFDLLKDLYATDPYFAP---LMDEVQARRNSEF 111
            K G +N VADALSRR  LL+ M N VLGF+ +K+LY  DP F+       E    + S++
Sbjct: 1012 KEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKY 1071

Query: 110  LLHDGFI 90
            LL +GF+
Sbjct: 1072 LLQEGFL 1078



 Score = 29.6 bits (65), Expect(2) = 1e-09
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 87   IFEGRRLCIPDCSLRFKIIKELYG---EGHFG 1
            +F+G +LC+P  S R  +I+E++     GHFG
Sbjct: 1078 LFQGNKLCVPRGSYRDLLIREVHSGGMGGHFG 1109


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 53.1 bits (126), Expect(2) = 1e-08
 Identities = 28/64 (43%), Positives = 41/64 (64%)
 Frame = -2

Query: 281  KLGVQNRVADALSRRSMLLTTMKNEVLGFDLLKDLYATDPYFAPLMDEVQARRNSEFLLH 102
            K G +N VADALSRR +L++T+ +++LGFD +K LYA D  F  +  E +     +F L 
Sbjct: 1069 KQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQ 1128

Query: 101  DGFI 90
            D F+
Sbjct: 1129 DEFL 1132



 Score = 30.8 bits (68), Expect(2) = 1e-08
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 87   IFEGRRLCIPDCSLRFKIIKELYG---EGHFG 1
            +F+  +LC+P+CSLR   ++E +     GHFG
Sbjct: 1132 LFKENKLCVPNCSLRELFVREAHCGGLMGHFG 1163


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 53.1 bits (126), Expect(2) = 1e-08
 Identities = 28/64 (43%), Positives = 41/64 (64%)
 Frame = -2

Query: 281  KLGVQNRVADALSRRSMLLTTMKNEVLGFDLLKDLYATDPYFAPLMDEVQARRNSEFLLH 102
            K G +N VADALSRR +L++T+ +++LGFD +K LYA D  F  +  E +     +F L 
Sbjct: 1069 KQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQ 1128

Query: 101  DGFI 90
            D F+
Sbjct: 1129 DEFL 1132



 Score = 30.8 bits (68), Expect(2) = 1e-08
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 87   IFEGRRLCIPDCSLRFKIIKELYG---EGHFG 1
            +F+  +LC+P+CSLR   ++E +     GHFG
Sbjct: 1132 LFKENKLCVPNCSLRELFVREAHCGGLMGHFG 1163