BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041605
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307479.1| predicted protein [Populus trichocarpa] gi|2...   124   1e-26
ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containi...   122   2e-26
gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucu...   121   5e-26
ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   117   1e-24
ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   117   1e-24

>ref|XP_002307479.1| predicted protein [Populus trichocarpa] gi|222856928|gb|EEE94475.1|
           predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/86 (66%), Positives = 69/86 (80%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC V+KMGF S S+CEG+ I MY KC+ + DAR +FDGA  LD VSWTSMI GY+++G P
Sbjct: 183 HCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLP 242

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           EEAVK+F +M+KVG  PDQVAFVTVI
Sbjct: 243 EEAVKVFQEMEKVGQEPDQVAFVTVI 268



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = -3

Query: 258  HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVF-DGADYLDTVSWTSMIAGYVRIGF 82
            H  +   GF SD     + +DMY KC  V  + QVF + +   D +SW SMI G+ + G+
Sbjct: 755  HSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGY 814

Query: 81   PEEAVKLFSDMQKVGGTPDQVAFVTVI 1
             E+A+++F +M++   TPD V F+ V+
Sbjct: 815  AEDALRVFDEMKQSHVTPDDVTFLGVL 841



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/86 (31%), Positives = 48/86 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H   +K G  S+ +   S + MY KC  +  A++VFD  +  + V W +M+ GYV+ G+ 
Sbjct: 350 HAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYA 409

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            E ++LF +M+  G  PD   + +++
Sbjct: 410 NEVMELFFNMKSCGFYPDDFTYSSIL 435



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H  ++K  F S+ F   + +DMY K   + DARQ F+     D VSW  +I GYV+    
Sbjct: 451 HSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDE 510

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EA  LF  M  +G  PD+V+  +++
Sbjct: 511 VEAFHLFRRMNLLGILPDEVSLASIL 536


>ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
           gi|302142763|emb|CBI19966.3| unnamed protein product
           [Vitis vinifera]
          Length = 1048

 Score =  122 bits (307), Expect = 2e-26
 Identities = 58/86 (67%), Positives = 69/86 (80%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC V+KMGF  +SFCEGS IDMY KC  + DAR++FD     DTVSWT+MIAGYV++G P
Sbjct: 205 HCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLP 264

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           EEA+K+F DMQK+G  PDQVAFVTVI
Sbjct: 265 EEALKVFEDMQKLGLVPDQVAFVTVI 290



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 29/86 (33%), Positives = 51/86 (59%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H   +K G  S+ +   S I+MY KC+ +  A++VFD  D  + V W +M+ GY + G+ 
Sbjct: 372 HAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYA 431

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            + +KLFS+M+  G  PD+  + +++
Sbjct: 432 SKVMKLFSEMRGCGFWPDEFTYTSIL 457



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -3

Query: 258  HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDG-ADYLDTVSWTSMIAGYVRIGF 82
            H  +  +G  SD     + +DMY KC  +  + QVF+      D +SW SMI G+ + G+
Sbjct: 777  HSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGY 836

Query: 81   PEEAVKLFSDMQKVGGTPDQVAFVTVI 1
             E A+K+F +M+     PD V F+ V+
Sbjct: 837  AENALKIFDEMKHTRIRPDDVTFLGVL 863



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/86 (34%), Positives = 48/86 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H  ++K  F  + F E + +DMY KC  + +ARQ F+     D VSW ++I GYV+    
Sbjct: 473 HSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDE 532

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           +EA  +F  M   G  PD+V+  +++
Sbjct: 533 DEAFNMFRRMILDGIAPDEVSLASIL 558



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC ++K G  +  +   S IDMY KC  +  AR VF        VS  ++IAGY +    
Sbjct: 574 HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL- 632

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EA+ LF +MQ  G  P ++ F +++
Sbjct: 633 VEAIDLFQEMQNEGLNPSEITFASLL 658



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 45/86 (52%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H   +K GFGS      + +D+Y KC  V  A + F+  +  D ++W S+++ Y R G  
Sbjct: 104 HAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSL 163

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           E+ +  F  +Q  G +P+Q  +  V+
Sbjct: 164 EQVIWCFGSLQNCGVSPNQFTYAIVL 189


>gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  121 bits (304), Expect = 5e-26
 Identities = 59/86 (68%), Positives = 66/86 (76%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC V KMGFG  SFC+G  IDMY KC  + DAR VFDGA  LDTVSWT++IAGYVR GFP
Sbjct: 165 HCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFP 224

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EAVK+F  MQ+VG  PDQ+A VTVI
Sbjct: 225 MEAVKVFDKMQRVGHVPDQIALVTVI 250



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC ++K+G  + +    S IDMY KC  V  AR VF    Y + VS  ++IAGY  +   
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHL 592

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           EEA+ LF ++Q VG  P +V F  ++
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLL 618



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTV-SWTSMIAGYVRIGF 82
           H  +   GF  D     S IDMY KC  V  + QVF      ++V SW SMI G  + G+
Sbjct: 737 HSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGY 796

Query: 81  PEEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EEA+++F  M++    PD+V F+ V+
Sbjct: 797 AEEALEIFKQMEQQSIIPDEVTFLGVL 823



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 48/86 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H  ++K  F S+ F   + +DMY K   + +AR+ F+     D VSW ++I GYV+  + 
Sbjct: 433 HTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYN 492

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           +EA  +F  M   G  PD+V+  +++
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIV 518



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 24/85 (28%), Positives = 47/85 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H   +K G   + +   + ++MY KC  ++ A+QVF+     + V W +M+ G+ + G  
Sbjct: 332 HAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLA 391

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTV 4
           +E ++ FS M++ G  PD+  F ++
Sbjct: 392 QEVMEFFSYMKRHGPQPDEFTFTSI 416


>ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  117 bits (293), Expect = 1e-24
 Identities = 56/86 (65%), Positives = 64/86 (74%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC V K GFG  SFC+G  IDMY KC  + DAR VFDGA  LDTVSWT++IAGYVR GFP
Sbjct: 165 HCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFP 224

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EAVK+F  MQ+VG  PDQ+  VTV+
Sbjct: 225 MEAVKVFDRMQRVGHAPDQITLVTVV 250



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC ++K+G  + +    S IDMY KC  V  AR VF      + VS  ++IAGY  +G  
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHL 592

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           EEA+ LF ++Q VG  P +V F  ++
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLL 618



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTV-SWTSMIAGYVRIGF 82
           H  +   GF  D     S IDMY KC  V  + QVF      + V SW SMI G  + G+
Sbjct: 737 HSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGY 796

Query: 81  PEEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EEA+++F  M++    PD+V F+ V+
Sbjct: 797 AEEALEIFKQMEQQSIIPDEVTFLGVL 823



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/86 (32%), Positives = 48/86 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H  ++K  F S+ F   + +DMY K   + +AR+ F+     D VSW ++I GYV+  + 
Sbjct: 433 HTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYN 492

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           +EA  +F  M   G  PD+V+  +++
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIV 518



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/85 (28%), Positives = 46/85 (54%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H    K G   + +   + ++MY KC  ++ A+QVF+     + V W +M+ G+ + G  
Sbjct: 332 HAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLA 391

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTV 4
           +E ++ FS M++ G  PD+  F ++
Sbjct: 392 QEVMEFFSCMKRHGPQPDEFTFTSI 416


>ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  117 bits (293), Expect = 1e-24
 Identities = 56/86 (65%), Positives = 64/86 (74%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC V K GFG  SFC+G  IDMY KC  + DAR VFDGA  LDTVSWT++IAGYVR GFP
Sbjct: 165 HCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFP 224

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EAVK+F  MQ+VG  PDQ+  VTV+
Sbjct: 225 MEAVKVFDRMQRVGHAPDQITLVTVV 250



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           HC ++K+G  + +    S IDMY KC  V  AR VF      + VS  ++IAGY  +G  
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHL 592

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           EEA+ LF ++Q VG  P +V F  ++
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLL 618



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTV-SWTSMIAGYVRIGF 82
           H  +   GF  D     S IDMY KC  V  + QVF      + V SW SMI G  + G+
Sbjct: 737 HSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGY 796

Query: 81  PEEAVKLFSDMQKVGGTPDQVAFVTVI 1
            EEA+++F  M++    PD+V F+ V+
Sbjct: 797 AEEALEIFKQMEQQSIIPDEVTFLGVL 823



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/86 (32%), Positives = 48/86 (55%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H  ++K  F S+ F   + +DMY K   + +AR+ F+     D VSW ++I GYV+  + 
Sbjct: 433 HTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYN 492

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTVI 1
           +EA  +F  M   G  PD+V+  +++
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIV 518



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/85 (28%), Positives = 46/85 (54%)
 Frame = -3

Query: 258 HCCVMKMGFGSDSFCEGSFIDMYFKCDCVNDARQVFDGADYLDTVSWTSMIAGYVRIGFP 79
           H    K G   + +   + ++MY KC  ++ A+QVF+     + V W +M+ G+ + G  
Sbjct: 332 HAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLA 391

Query: 78  EEAVKLFSDMQKVGGTPDQVAFVTV 4
           +E ++ FS M++ G  PD+  F ++
Sbjct: 392 QEVMEFFSCMKRHGPQPDEFTFTSI 416