BLASTX nr result
ID: Coptis25_contig00041604
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041604 (322 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002306009.1| predicted protein [Populus trichocarpa] gi|2... 132 3e-29 ref|XP_002518010.1| pentatricopeptide repeat-containing protein,... 130 9e-29 emb|CBI27699.3| unnamed protein product [Vitis vinifera] 124 6e-27 ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat... 124 6e-27 ref|NP_196466.1| pentatricopeptide repeat-containing protein [Ar... 123 2e-26 >ref|XP_002306009.1| predicted protein [Populus trichocarpa] gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa] Length = 870 Score = 132 bits (332), Expect = 3e-29 Identities = 65/107 (60%), Positives = 84/107 (78%) Frame = +1 Query: 1 MVGHVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFN 180 ++ V V N+LVSFY R+GR++EAE +FRRME RDLVSWNAIIAGYAS+ K+LELF+ Sbjct: 267 LLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFH 326 Query: 181 ELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGHPELCKD 321 ELL+ + +PDSVT++ I+P C Q RNL VG+ IH +VL HP LC+D Sbjct: 327 ELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCED 373 Score = 74.3 bits (181), Expect = 1e-11 Identities = 35/90 (38%), Positives = 59/90 (65%) Frame = +1 Query: 28 SLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLSTGVDK 207 +++S Y G L EA F RM S DL WN ++ YA + CS ++L LF+EL + G+ K Sbjct: 517 AIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGI-K 575 Query: 208 PDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 PD+VT++S+LP C ++ ++Q+ ++ H + + Sbjct: 576 PDAVTIMSLLPACAEMASVQLIKQCHGYAI 605 Score = 71.2 bits (173), Expect = 8e-11 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 4/108 (3%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRL-KEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNEL 186 H N+LVS Y++ G + ++A + F ++ +D+VSWNAII+G+A + + + LF+ + Sbjct: 164 HTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSM 223 Query: 187 LSTGVDKPDSVTVISILPVCGQLRN---LQVGQKIHDFVLGHPELCKD 321 L G KP+ T+ +ILPVC G++IH +VL H EL D Sbjct: 224 LK-GQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLAD 270 Score = 66.2 bits (160), Expect = 3e-09 Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 7/105 (6%) Frame = +1 Query: 4 VGHVS---VCNSLVSFYSRIGRLKEAESVFRRMES---RDLVSWNAIIAGYASSAC-SQK 162 +GHVS V +L++ Y++ G L E++ +F + S RD + WN +++GYA S + Sbjct: 53 IGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAE 112 Query: 163 SLELFNELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 +L LF E+ KP SVT +LPVC +L ++ +G+ ++ + + Sbjct: 113 TLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAI 157 Score = 58.9 bits (141), Expect = 4e-07 Identities = 32/96 (33%), Positives = 53/96 (55%) Frame = +1 Query: 16 SVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 SV N+LVSFY++ ++ A F + RDL+SWN+++ S + LEL +LS Sbjct: 375 SVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSE 434 Query: 196 GVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGH 303 G PDSVT++S++ C + ++ H + + H Sbjct: 435 GT-TPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRH 469 >ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542992|gb|EEF44528.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 824 Score = 130 bits (328), Expect = 9e-29 Identities = 63/103 (61%), Positives = 83/103 (80%) Frame = +1 Query: 13 VSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLS 192 VSVCN+L+SF+ +GR+KEAE +FRRME RDL+SWNAII+G+AS+ KSLELF ELL Sbjct: 218 VSVCNALLSFHLMVGRVKEAELLFRRMELRDLISWNAIISGFASNGEWSKSLELFQELLY 277 Query: 193 TGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGHPELCKD 321 ++PDSVT++SILP C QL+NL+ G++IH +VL HP L +D Sbjct: 278 LESNEPDSVTLVSILPACAQLQNLKAGREIHSYVLRHPYLYQD 320 Score = 73.2 bits (178), Expect = 2e-11 Identities = 33/91 (36%), Positives = 57/91 (62%) Frame = +1 Query: 25 NSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLSTGVD 204 NS++S Y G +A +F +M + DL +WN ++ G A + C ++ LF EL + G+ Sbjct: 461 NSMISGYVNCGLYDDAYMIFEKMPASDLTTWNLMVRGCAENDCPDQAFSLFRELQARGM- 519 Query: 205 KPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 KPD+VT+IS+LP C Q ++ + ++ H +V+ Sbjct: 520 KPDAVTIISLLPSCAQTASVHLMKQCHGYVI 550 Score = 66.6 bits (161), Expect = 2e-09 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 4/111 (3%) Frame = +1 Query: 1 MVGHVSVCNSLVSFYSRIGRLK-EAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELF 177 M H V N+LVS Y++ G + +A + F+ + +D+VSWNAIIAG++ + +L LF Sbjct: 108 METHTLVGNALVSMYAKCGLVSYDAYAAFQSIYHKDVVSWNAIIAGFSENKMVDSALRLF 167 Query: 178 NELLSTGVDKPDSVTVISILPVCGQLRN---LQVGQKIHDFVLGHPELCKD 321 +L T + KP+ T+ ++LP+ L G++IH ++L H E D Sbjct: 168 FFMLKTQI-KPNHATIATVLPLLASLATDTAYLFGREIHCYILRHNESLAD 217 Score = 60.8 bits (146), Expect = 1e-07 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Frame = +1 Query: 4 VGHVS---VCNSLVSFYSRIGRLKEAESVFRRME--SRDLVSWNAIIAGYASSACSQ-KS 165 +GH+S + SL++ Y++ G ++ +F + S D + WN +++G+A+S ++ Sbjct: 1 MGHLSSLYLSKSLLNMYAKCGAFSDSNKLFGEISNCSHDPIFWNILLSGFAASPIHDAQT 60 Query: 166 LELFNELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 FN + KP SVT ILPVC ++R++ VG+ H +++ Sbjct: 61 FSFFNRMRVANQVKPTSVTAAVILPVCARMRDIYVGKSFHCYMI 104 Score = 59.3 bits (142), Expect = 3e-07 Identities = 30/94 (31%), Positives = 56/94 (59%) Frame = +1 Query: 16 SVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 SV N+LVSFY++ L A F + SRDL+SWN+++ +A + + +L + + + Sbjct: 322 SVGNALVSFYAKCNNLVAAYHTFLMIPSRDLISWNSMLDAFAIGGRNAQFFKLLHWMHTE 381 Query: 196 GVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 G+ +PDS+T+++IL C + + ++ H + L Sbjct: 382 GI-RPDSITILTILHFCANVLKVDKVKETHCYSL 414 >emb|CBI27699.3| unnamed protein product [Vitis vinifera] Length = 807 Score = 124 bits (312), Expect = 6e-27 Identities = 61/107 (57%), Positives = 82/107 (76%) Frame = +1 Query: 1 MVGHVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFN 180 +V VSV NSL+SFY RIG++++AE +FR M+SRDLVSWNAIIAGYAS+ K+LELF+ Sbjct: 217 LVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFS 276 Query: 181 ELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGHPELCKD 321 E +S KPDSVT++S+LP C + NLQV + IH +++ HP L +D Sbjct: 277 EFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 323 Score = 73.9 bits (180), Expect = 1e-11 Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 4/108 (3%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRL-KEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNEL 186 H N+L+S Y++ G + +A + F R+E +D+VSWNA+IAG++ + ++++ +LF+ + Sbjct: 114 HTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAM 173 Query: 187 LSTGVDKPDSVTVISILPVCGQLR---NLQVGQKIHDFVLGHPELCKD 321 L G +P+ T+ SILPVC L + G+++H VL EL +D Sbjct: 174 LK-GPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVED 220 Score = 69.7 bits (169), Expect = 2e-10 Identities = 33/96 (34%), Positives = 57/96 (59%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELL 189 +V CNS++S Y +A ++F M DL +WN ++ YA + ++L LF+EL Sbjct: 459 NVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQ 518 Query: 190 STGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 G+ KPD VT++SILP C + ++ + ++ H +V+ Sbjct: 519 GQGM-KPDIVTIMSILPACAHMASVHMLRQCHGYVI 553 Score = 65.9 bits (159), Expect = 3e-09 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +1 Query: 7 GHVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYAS-SACSQKSLELFNE 183 G+ S+C L++ Y++ G L +F M+ RD V WN +++G A + + + LF Sbjct: 11 GYDSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRA 70 Query: 184 LLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 + KP+SVT+ +LPVC +LR G+ +H +V+ Sbjct: 71 MHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVI 107 Score = 58.5 bits (140), Expect = 5e-07 Identities = 27/92 (29%), Positives = 53/92 (57%) Frame = +1 Query: 16 SVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 SV N+L+SFY++ + A F + +DL+SWNAI+ + S C + L + +L Sbjct: 325 SVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLRE 384 Query: 196 GVDKPDSVTVISILPVCGQLRNLQVGQKIHDF 291 G+ +PDS+T+++I+ + ++ ++ H + Sbjct: 385 GI-RPDSITILTIIQYYAAVSRVKKVKETHSY 415 >ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Vitis vinifera] Length = 868 Score = 124 bits (312), Expect = 6e-27 Identities = 61/107 (57%), Positives = 82/107 (76%) Frame = +1 Query: 1 MVGHVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFN 180 +V VSV NSL+SFY RIG++++AE +FR M+SRDLVSWNAIIAGYAS+ K+LELF+ Sbjct: 278 LVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFS 337 Query: 181 ELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGHPELCKD 321 E +S KPDSVT++S+LP C + NLQV + IH +++ HP L +D Sbjct: 338 EFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 384 Score = 73.9 bits (180), Expect = 1e-11 Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 4/108 (3%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRL-KEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNEL 186 H N+L+S Y++ G + +A + F R+E +D+VSWNA+IAG++ + ++++ +LF+ + Sbjct: 175 HTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAM 234 Query: 187 LSTGVDKPDSVTVISILPVCGQLR---NLQVGQKIHDFVLGHPELCKD 321 L G +P+ T+ SILPVC L + G+++H VL EL +D Sbjct: 235 LK-GPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVED 281 Score = 69.7 bits (169), Expect = 2e-10 Identities = 33/96 (34%), Positives = 57/96 (59%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELL 189 +V CNS++S Y +A ++F M DL +WN ++ YA + ++L LF+EL Sbjct: 520 NVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQ 579 Query: 190 STGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 G+ KPD VT++SILP C + ++ + ++ H +V+ Sbjct: 580 GQGM-KPDIVTIMSILPACAHMASVHMLRQCHGYVI 614 Score = 65.9 bits (159), Expect = 3e-09 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Frame = +1 Query: 4 VGHVS---VCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYAS-SACSQKSLE 171 +GHVS +C L++ Y++ G L +F M+ RD V WN +++G A + + + Sbjct: 68 LGHVSCQSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMR 127 Query: 172 LFNELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 LF + KP+SVT+ +LPVC +LR G+ +H +V+ Sbjct: 128 LFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVI 168 Score = 58.5 bits (140), Expect = 5e-07 Identities = 27/92 (29%), Positives = 53/92 (57%) Frame = +1 Query: 16 SVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 SV N+L+SFY++ + A F + +DL+SWNAI+ + S C + L + +L Sbjct: 386 SVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLRE 445 Query: 196 GVDKPDSVTVISILPVCGQLRNLQVGQKIHDF 291 G+ +PDS+T+++I+ + ++ ++ H + Sbjct: 446 GI-RPDSITILTIIQYYAAVSRVKKVKETHSY 476 >ref|NP_196466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171897|sp|Q9FNN9.1|PP370_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g08490 gi|9759343|dbj|BAB09998.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332003927|gb|AED91310.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 849 Score = 123 bits (308), Expect = 2e-26 Identities = 60/104 (57%), Positives = 78/104 (75%) Frame = +1 Query: 10 HVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELL 189 HV VCNSLVSFY R+GR++EA S+F RM S+DLVSWN +IAGYAS+ K+ +LF+ L+ Sbjct: 262 HVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLV 321 Query: 190 STGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVLGHPELCKD 321 G PDSVT+ISILPVC QL +L G++IH ++L H L +D Sbjct: 322 HKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLED 365 Score = 69.7 bits (169), Expect = 2e-10 Identities = 30/91 (32%), Positives = 60/91 (65%) Frame = +1 Query: 25 NSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLSTGVD 204 NSL+S Y G +A+ +F M + DL +W+ ++ YA S C +++ +F E+ + G+ Sbjct: 506 NSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGM- 564 Query: 205 KPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 +P++VT++++LPVC QL +L + ++ H +++ Sbjct: 565 RPNTVTIMNLLPVCAQLASLHLVRQCHGYII 595 Score = 63.2 bits (152), Expect = 2e-08 Identities = 29/101 (28%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Frame = +1 Query: 4 VGHVS---VCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLEL 174 +GH++ V S+++ Y++ R+ + + +FR+M+S D V WN ++ G S +C ++++ Sbjct: 50 LGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTG-LSVSCGRETMRF 108 Query: 175 FNELLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFVL 297 F + KP SVT +LP+C +L + G+ +H +++ Sbjct: 109 FKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYII 149 Score = 62.8 bits (151), Expect = 3e-08 Identities = 32/92 (34%), Positives = 55/92 (59%) Frame = +1 Query: 16 SVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 SV N+L+SFY+R G A F M ++D++SWNAI+ +A S + L L + LL+ Sbjct: 367 SVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNE 426 Query: 196 GVDKPDSVTVISILPVCGQLRNLQVGQKIHDF 291 + DSVT++S+L C ++ + +++H + Sbjct: 427 AITL-DSVTILSLLKFCINVQGIGKVKEVHGY 457 Score = 58.2 bits (139), Expect = 7e-07 Identities = 30/97 (30%), Positives = 57/97 (58%) Frame = +1 Query: 4 VGHVSVCNSLVSFYSRIGRLKEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNE 183 +G + + +L+ Y++ G LK A SVF+ RDLV + A++AGYA +++L +++ Sbjct: 599 LGDIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSH 658 Query: 184 LLSTGVDKPDSVTVISILPVCGQLRNLQVGQKIHDFV 294 + + + KPD V + ++L C +Q G +I+D + Sbjct: 659 MTESNI-KPDHVFITTMLTACCHAGLIQDGLQIYDSI 694 Score = 55.1 bits (131), Expect = 6e-06 Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 4/97 (4%) Frame = +1 Query: 19 VCNSLVSFYSRIGRL-KEAESVFRRMESRDLVSWNAIIAGYASSACSQKSLELFNELLST 195 V N+LVS Y++ G + +A + F + +D+VSWNAIIAG++ + + F +L Sbjct: 159 VGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKE 218 Query: 196 GVDKPDSVTVISILPVCGQL-RNL--QVGQKIHDFVL 297 + P+ T+ ++LPVC + +N+ + G++IH +V+ Sbjct: 219 PTE-PNYATIANVLPVCASMDKNIACRSGRQIHSYVV 254