BLASTX nr result
ID: Coptis25_contig00041587
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041587 (246 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 80 1e-13 gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 79 5e-13 emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 77 2e-12 dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 76 3e-12 dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 76 3e-12 >gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis thaliana] Length = 732 Score = 80.5 bits (197), Expect = 1e-13 Identities = 33/67 (49%), Positives = 44/67 (65%) Frame = -3 Query: 244 DKACRDFWWNGTEKSNSVHTIGWKHICKTKAEGGLGLRKARDMNEAMLAKLPWKAATDIQ 65 DK R F W + H I WK +CK ++EGGLG+RKA+DMN+A+L+K+ W+ D Sbjct: 344 DKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYH 403 Query: 64 SLWTRIM 44 SLW RIM Sbjct: 404 SLWARIM 410 >gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1231 Score = 78.6 bits (192), Expect = 5e-13 Identities = 32/67 (47%), Positives = 45/67 (67%) Frame = -3 Query: 244 DKACRDFWWNGTEKSNSVHTIGWKHICKTKAEGGLGLRKARDMNEAMLAKLPWKAATDIQ 65 D+ R F W T + H + W+ ICK KAEGG+GLR ARDMN+A++AK+ W+ D + Sbjct: 682 DRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKE 741 Query: 64 SLWTRIM 44 SLW R++ Sbjct: 742 SLWARVV 748 >emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana] gi|7268307|emb|CAB78601.1| reverse transcriptase like protein [Arabidopsis thaliana] Length = 929 Score = 76.6 bits (187), Expect = 2e-12 Identities = 31/67 (46%), Positives = 43/67 (64%) Frame = -3 Query: 244 DKACRDFWWNGTEKSNSVHTIGWKHICKTKAEGGLGLRKARDMNEAMLAKLPWKAATDIQ 65 DK R+F W T + H + WK +C+ KA GGLGLR ++DMN A+LAK+ W+ D Sbjct: 617 DKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKV 676 Query: 64 SLWTRIM 44 SLW R++ Sbjct: 677 SLWARVL 683 >dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] Length = 1898 Score = 75.9 bits (185), Expect = 3e-12 Identities = 29/67 (43%), Positives = 42/67 (62%) Frame = -3 Query: 244 DKACRDFWWNGTEKSNSVHTIGWKHICKTKAEGGLGLRKARDMNEAMLAKLPWKAATDIQ 65 DK CR+F W + +H++ W ICK + EGGLGLR ARD N A L K+ W+ ++I Sbjct: 1355 DKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNID 1414 Query: 64 SLWTRIM 44 LW +++ Sbjct: 1415 KLWVKVL 1421 >dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] Length = 1366 Score = 75.9 bits (185), Expect = 3e-12 Identities = 29/67 (43%), Positives = 42/67 (62%) Frame = -3 Query: 244 DKACRDFWWNGTEKSNSVHTIGWKHICKTKAEGGLGLRKARDMNEAMLAKLPWKAATDIQ 65 DK CR+F W + +H++ W ICK + EGGLGLR ARD N A L K+ W+ ++I Sbjct: 823 DKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNID 882 Query: 64 SLWTRIM 44 LW +++ Sbjct: 883 KLWVKVL 889