BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041578
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   149   2e-34
emb|CBI22269.3| unnamed protein product [Vitis vinifera]              144   8e-33
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   144   8e-33
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2...   142   3e-32

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  149 bits (376), Expect = 2e-34
 Identities = 73/105 (69%), Positives = 87/105 (82%)
 Frame = +1

Query: 1   EAFKLVQDLPMEPNAIILGTLLGACRMHNNVELAEKVIDQLVKLDPSNANNYSILSNIYA 180
           EAF+LVQ +PMEPN +I GTLLGACR+HN V LAEKV+D+L+ L+ S+  NYS+LSNI+A
Sbjct: 472 EAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFA 531

Query: 181 AAGHWNNFAKVRLQMKSTTTQKLPGASSIELDDGVHEFTVADRSH 315
           AAG WN+ A +RLQMKST  QK  GASSIELDD VHEFTV D+SH
Sbjct: 532 AAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSH 576


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  144 bits (363), Expect = 8e-33
 Identities = 71/105 (67%), Positives = 86/105 (81%)
 Frame = +1

Query: 1   EAFKLVQDLPMEPNAIILGTLLGACRMHNNVELAEKVIDQLVKLDPSNANNYSILSNIYA 180
           EAF+LV  +P+EPNAII GTLLGACRMH+   LAE+V D+LVK + S++ N S+LSNIYA
Sbjct: 381 EAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYA 440

Query: 181 AAGHWNNFAKVRLQMKSTTTQKLPGASSIELDDGVHEFTVADRSH 315
           AAG W+NFA +RL+MKST+ QK  G SSIE+DD VHEFTV DRSH
Sbjct: 441 AAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSH 485


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  144 bits (363), Expect = 8e-33
 Identities = 71/105 (67%), Positives = 86/105 (81%)
 Frame = +1

Query: 1   EAFKLVQDLPMEPNAIILGTLLGACRMHNNVELAEKVIDQLVKLDPSNANNYSILSNIYA 180
           EAF+LV  +P+EPNAII GTLLGACRMH+   LAE+V D+LVK + S++ N S+LSNIYA
Sbjct: 466 EAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYA 525

Query: 181 AAGHWNNFAKVRLQMKSTTTQKLPGASSIELDDGVHEFTVADRSH 315
           AAG W+NFA +RL+MKST+ QK  G SSIE+DD VHEFTV DRSH
Sbjct: 526 AAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSH 570


>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  142 bits (359), Expect = 2e-32
 Identities = 70/105 (66%), Positives = 85/105 (80%)
 Frame = +1

Query: 1   EAFKLVQDLPMEPNAIILGTLLGACRMHNNVELAEKVIDQLVKLDPSNANNYSILSNIYA 180
           EAF L++ +PMEPNAIILGTLL ACRMHN+V+LA  V +QL KL+PS+  NYS+LSNIYA
Sbjct: 472 EAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYA 531

Query: 181 AAGHWNNFAKVRLQMKSTTTQKLPGASSIELDDGVHEFTVADRSH 315
            AG W N A VRLQMK+T  +K  GASSIE+++ VHEFTV D+SH
Sbjct: 532 QAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSH 576


>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
           predicted protein [Populus trichocarpa]
          Length = 427

 Score =  142 bits (358), Expect = 3e-32
 Identities = 69/105 (65%), Positives = 86/105 (81%)
 Frame = +1

Query: 1   EAFKLVQDLPMEPNAIILGTLLGACRMHNNVELAEKVIDQLVKLDPSNANNYSILSNIYA 180
           EA++LVQ +P+EPN +I GTLLGACRMHN V LAE+V+D L KL+PS+  NYS+LSNI+A
Sbjct: 295 EAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFA 354

Query: 181 AAGHWNNFAKVRLQMKSTTTQKLPGASSIELDDGVHEFTVADRSH 315
           +AG W++ A VRLQMK+   QK  GASSIE+DD VHEFTV D+SH
Sbjct: 355 SAGDWSSVANVRLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSH 399