BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041573
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530005.1| pentatricopeptide repeat-containing protein,...   146   2e-33
ref|XP_003601393.1| Pentatricopeptide repeat-containing protein ...   143   2e-32
ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
emb|CBI22251.3| unnamed protein product [Vitis vinifera]              140   1e-31
emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]   140   1e-31

>ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530484|gb|EEF32367.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 499

 Score =  146 bits (368), Expect = 2e-33
 Identities = 69/92 (75%), Positives = 78/92 (84%)
 Frame = +3

Query: 6   LEEAYELITTMPIPSNDVVWGALLGACRIYGNIDMGERVVKKLLELKPDEGGYYILLSDM 185
           LEEAYELI TMPIPSND+VWGALL ACRIYG+++MGERVVKKLLELKPDEGGYYILL D+
Sbjct: 407 LEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDI 466

Query: 186 YAAAGRQVEAMKMRETMKIVGAQKNTGISWVG 281
           Y A+GR  EA  +R+ M+  GA KN G SWVG
Sbjct: 467 YVASGRTAEANHIRQAMQESGAMKNPGYSWVG 498


>ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|358344321|ref|XP_003636238.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355490441|gb|AES71644.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502173|gb|AES83376.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 486

 Score =  143 bits (360), Expect = 2e-32
 Identities = 66/91 (72%), Positives = 78/91 (85%)
 Frame = +3

Query: 6   LEEAYELITTMPIPSNDVVWGALLGACRIYGNIDMGERVVKKLLELKPDEGGYYILLSDM 185
           L+EAY L+T+MPIPSNDV+WGALLGACRI+G++ MGERV+KKLLELKPDEGGYYILL D+
Sbjct: 394 LQEAYNLLTSMPIPSNDVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDI 453

Query: 186 YAAAGRQVEAMKMRETMKIVGAQKNTGISWV 278
           Y AAGR  EA +MR+ M   GA+KN G SWV
Sbjct: 454 YVAAGRTAEANEMRQAMLASGARKNPGCSWV 484


>ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 663

 Score =  140 bits (353), Expect = 1e-31
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = +3

Query: 6   LEEAYELITTMPIPSNDVVWGALLGACRIYGNIDMGERVVKKLLELKPDEGGYYILLSDM 185
           LEEAY+LIT+M +P NDVVWGALL ACRIYG+++MGERV+KKL+ELKPDEGGYYILL D+
Sbjct: 571 LEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDI 630

Query: 186 YAAAGRQVEAMKMRETMKIVGAQKNTGISWVG 281
           Y AAGR+ EA+++R  M + GA+K  G SWVG
Sbjct: 631 YVAAGRRAEAIELRRAMDVNGAKKTLGCSWVG 662


>emb|CBI22251.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  140 bits (353), Expect = 1e-31
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = +3

Query: 6   LEEAYELITTMPIPSNDVVWGALLGACRIYGNIDMGERVVKKLLELKPDEGGYYILLSDM 185
           LEEAY+LIT+M +P NDVVWGALL ACRIYG+++MGERV+KKL+ELKPDEGGYYILL D+
Sbjct: 384 LEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDI 443

Query: 186 YAAAGRQVEAMKMRETMKIVGAQKNTGISWVG 281
           Y AAGR+ EA+++R  M + GA+K  G SWVG
Sbjct: 444 YVAAGRRAEAIELRRAMDVNGAKKTLGCSWVG 475


>emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  140 bits (353), Expect = 1e-31
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = +3

Query: 6   LEEAYELITTMPIPSNDVVWGALLGACRIYGNIDMGERVVKKLLELKPDEGGYYILLSDM 185
           LEEAY+LIT+M +P NDVVWGALL ACRIYG+++MGERV+KKL+ELKPDEGGYYILL D+
Sbjct: 630 LEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDI 689

Query: 186 YAAAGRQVEAMKMRETMKIVGAQKNTGISWVG 281
           Y AAGR+ EA+++R  M + GA+K  G SWVG
Sbjct: 690 YVAAGRRAEAIELRRAMDVNGAKKTLGCSWVG 721