BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041532
         (486 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...    74   7e-26
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]    73   6e-25
emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]    77   3e-23
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          69   3e-23
gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]                69   3e-23

>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score = 74.3 bits (181), Expect(2) = 7e-26
 Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
 Frame = +3

Query: 207 NIADMACTLLFTSHVPLTHWVDVVSVAVYLINRLPSSILQWSSPYSRLYGKSPFYPELRV 386
           ++ ++  ++LF SH P   WV+    A Y+INRLPSS+L+  SPY  L+G+ P Y  LRV
Sbjct: 622 HLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRV 681

Query: 387 F----QLCMLSTLMNLYD*QTFAKKYCVFLGYSMQHK 485
           F      C+     N +D ++     CVFLGY+ Q+K
Sbjct: 682 FGSACYPCLRPLAQNKFDPRSL---QCVFLGYNSQYK 715



 Score = 67.8 bits (164), Expect(2) = 7e-26
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = +2

Query: 47  IKTQFSSTLQNFQSDGGGEFDNGNFIKQLYSSFGIHHRFSCPHTLEQNGLAERKHR 214
           ++ Q ++ ++ FQSDGGGEF + N +K   S  GIHHR SCP+T +QNGLAERKHR
Sbjct: 567 VENQLNTKIKVFQSDGGGEFVS-NKLKTHLSEHGIHHRISCPYTPQQNGLAERKHR 621


>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
          Length = 1453

 Score = 73.2 bits (178), Expect(2) = 6e-25
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
 Frame = +3

Query: 207 NIADMACTLLFTSHVPLTHWVDVVSVAVYLINRLPSSILQWSSPYSRLYGKSPFYPELRV 386
           ++ +    LLF SHVP  +WVD  S A Y+INRLP  +L   SP+  L+GKSP Y     
Sbjct: 579 HVTETGLALLFHSHVPPRYWVDAFSTATYIINRLPLPVLGGLSPFEVLFGKSPNYENFHP 638

Query: 387 FQLCMLSTLMNLYD*QTFAKKY--CVFLGYSMQHK 485
           F  C +   +  Y    F+ +   C+FLGYS  HK
Sbjct: 639 FG-CRVYPCLRDYAPHKFSPRSLPCIFLGYSSSHK 672



 Score = 65.9 bits (159), Expect(2) = 6e-25
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +2

Query: 47  IKTQFSSTLQNFQSDGGGEFDNGNFIKQLYSSFGIHHRFSCPHTLEQNGLAERKHR 214
           ++ Q+S+ ++ FQSDGG EF +  F   L   FGIHH+ SCP+T  QNG AERKHR
Sbjct: 524 VENQYSTKIKIFQSDGGAEFTSNRFQSHL-QQFGIHHQMSCPYTPSQNGRAERKHR 578


>emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]
          Length = 1884

 Score = 77.0 bits (188), Expect(2) = 3e-23
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
 Frame = +3

Query: 207 NIADMACTLLFTSHVPLTHWVDVVSVAVYLINRLPSSILQWSSPYSRLYGKSPFYPELRV 386
           +I +M  T+LF + +PL+ WVD    AVYLINRLPS++L+  SP+  L+ + P Y  LR+
Sbjct: 572 HIVEMGLTMLFNAKLPLSLWVDAFLTAVYLINRLPSTVLKMESPFFMLFKQYPEYRSLRI 631

Query: 387 FQLCMLSTLMNLYD*QTFAKKY--CVFLGYSMQHK 485
           F  C     +  Y    F+ K   CVF+GYS  HK
Sbjct: 632 FG-CQCFPYLRDYGKNKFSPKTYPCVFIGYSSLHK 665



 Score = 56.2 bits (134), Expect(2) = 3e-23
 Identities = 32/64 (50%), Positives = 40/64 (62%)
 Frame = +2

Query: 23  LKFSLHAHIKTQFSSTLQNFQSDGGGEFDNGNFIKQLYSSFGIHHRFSCPHTLEQNGLAE 202
           LKF +   ++ Q    ++ FQSDGGGEF +  F   L S  GI  + SCP T EQNG+AE
Sbjct: 511 LKFQIL--VENQLERRIKIFQSDGGGEFQSIKFQNHL-SKCGILQQVSCPGTPEQNGVAE 567

Query: 203 RKHR 214
           RKHR
Sbjct: 568 RKHR 571


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 68.9 bits (167), Expect(2) = 3e-23
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +2

Query: 47  IKTQFSSTLQNFQSDGGGEFDNGNFIKQLYSSFGIHHRFSCPHTLEQNGLAERKHR 214
           ++ Q  + ++ FQSDGGGEF + N +K+ +   GIHHR SCP+T +QNG+AERKHR
Sbjct: 569 VENQLGTKIKEFQSDGGGEFTS-NKLKEHFREHGIHHRISCPYTPQQNGVAERKHR 623



 Score = 64.3 bits (155), Expect(2) = 3e-23
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
 Frame = +3

Query: 207 NIADMACTLLFTSHVPLTHWVDVVSVAVYLINRLPSSILQWSSPYSRLYGKSPFYPELRV 386
           ++ ++  ++L+ SH PL  WV+    A YL N LPSS+L+  SPY  L+ +   Y  LRV
Sbjct: 624 HLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRV 683

Query: 387 FQL----CMLSTLMNLYD*QTFAKKYCVFLGYSMQHK 485
           F      C+     N +D ++     CVFLGY  Q+K
Sbjct: 684 FGTACYPCLRPLAKNKFDPRSL---QCVFLGYHNQYK 717


>gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]
          Length = 1309

 Score = 68.9 bits (167), Expect(2) = 3e-23
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +2

Query: 47  IKTQFSSTLQNFQSDGGGEFDNGNFIKQLYSSFGIHHRFSCPHTLEQNGLAERKHR 214
           ++ Q  + ++ FQSDGGGEF + N +K+ +   GIHHR SCP+T +QNG+AERKHR
Sbjct: 412 VENQLGTKIKEFQSDGGGEFTS-NKLKEHFREHGIHHRISCPYTPQQNGVAERKHR 466



 Score = 64.3 bits (155), Expect(2) = 3e-23
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
 Frame = +3

Query: 207 NIADMACTLLFTSHVPLTHWVDVVSVAVYLINRLPSSILQWSSPYSRLYGKSPFYPELRV 386
           ++ ++  ++L+ SH PL  WV+    A YL N LPSS+L+  SPY  L+ +   Y  LRV
Sbjct: 467 HLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRV 526

Query: 387 FQL----CMLSTLMNLYD*QTFAKKYCVFLGYSMQHK 485
           F      C+     N +D ++     CVFLGY  Q+K
Sbjct: 527 FGTACYPCLRPLAKNKFDPRSL---QCVFLGYHNQYK 560