BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041524
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    69   3e-10
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    69   5e-10
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]              69   5e-10
emb|CAN71912.1| hypothetical protein VITISV_018965 [Vitis vinifera]    69   5e-10
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    68   7e-10

>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +3

Query: 3   DF*WHGTQESKSIHTI*WDKLCKPKSLGGLGFRKFVDINKALLAKHSWRALN--ESLWAR 176
           DF W   QE+K +H   WD L   K+ GG+GF+     N ALL K  WR L+  ESL A+
Sbjct: 27  DFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAK 86

Query: 177 TFKVAYGNKWIGHEERPPSNASFFWKRVHKNHDLIQNG 290
            FK  Y +K         S  SF WK +H + ++++ G
Sbjct: 87  VFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
 Frame = +3

Query: 6   F*WHGTQESKSIHTI*WDKLCKPKSLGGLGFRKFVDINKALLAKHSWRALN--ESLWART 179
           F W    +S+ +H + WDKLC  KS GGLGFR   D N ALLAK  WR +   +SL+A+ 
Sbjct: 609 FWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKV 668

Query: 180 FKVAYGNKWIGHEERPPSNASFFWKRVHKNHDLIQNG 290
           FK  Y  K    +     + S+ W+ +     L+  G
Sbjct: 669 FKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKG 705


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
 Frame = +3

Query: 6   F*WHGTQESKSIHTI*WDKLCKPKSLGGLGFRKFVDINKALLAKHSWRALN--ESLWART 179
           F W    ES+ +H + W+KLC  K+ GGLGFR   D N ALLAK  WR +   +SL+A+ 
Sbjct: 675 FWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFAKV 734

Query: 180 FKVAYGNKWIGHEERPPSNASFFWKRVHKNHDLIQNG 290
           FK  Y  K    ++    + S+ W+ +     L++ G
Sbjct: 735 FKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKG 771


>emb|CAN71912.1| hypothetical protein VITISV_018965 [Vitis vinifera]
          Length = 1856

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +3

Query: 3    DF*WHGTQESKSIHTI*WDKLCKPKSLGGLGFRKFVDINKALLAKHSWR--ALNESLWAR 176
            DF W G    +  H + W+++C  K  GGLG RK V +NKALL K  WR     E LW R
Sbjct: 950  DFLWGGGSTERKAHLVNWERVCVGKEKGGLGLRKLVQLNKALLGKWVWRFARAKEELWKR 1009

Query: 177  TFKVAYGNKWIGHEERPPSNASF---FWKRVHKNHD 275
                 YG K  G   +  +N +F    WK + K  D
Sbjct: 1010 VLVAKYGQKEFGWRTK-KANGAFGVRVWKEILKEAD 1044


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 3   DF*WHGTQESKSIHTI*WDKLCKPKSLGGLGFRKFVDINKALLAKHSWRALNE--SLWAR 176
           +F W  T E +  H + W K+C+PK+ GGLG R   D+N+ALLAK  WR LN+  SLWAR
Sbjct: 622 NFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWAR 681

Query: 177 TFKVAY 194
             +  Y
Sbjct: 682 VLRRKY 687