BLASTX nr result

ID: Coptis25_contig00041436 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041436
         (238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002879456.1| hypothetical protein ARALYDRAFT_902425 [Arab...    56   3e-06
ref|XP_002304657.1| predicted protein [Populus trichocarpa] gi|2...    55   5e-06

>ref|XP_002879456.1| hypothetical protein ARALYDRAFT_902425 [Arabidopsis lyrata subsp.
           lyrata] gi|297325295|gb|EFH55715.1| hypothetical protein
           ARALYDRAFT_902425 [Arabidopsis lyrata subsp. lyrata]
          Length = 183

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -3

Query: 233 MEAPDMASIT-ALERSLQNCSLXXXXXXXXXXXXXXXGIXXXXXXXXXXXXXXXXXSHVS 57
           M+AP+M +IT +LE+S+QNCSL                                  SH+S
Sbjct: 1   MKAPNMETITESLEKSMQNCSLNDRRRRVVGDGFGRSS---SNEHTPISDRTLELNSHLS 57

Query: 56  LPYHWEQCLDLKTGEIYY 3
           LP HWEQCLDLKTGEIYY
Sbjct: 58  LPCHWEQCLDLKTGEIYY 75


>ref|XP_002304657.1| predicted protein [Populus trichocarpa] gi|222842089|gb|EEE79636.1|
           predicted protein [Populus trichocarpa]
          Length = 177

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 36/78 (46%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = -3

Query: 218 MASITA-LERSLQNCSLXXXXXXXXXXXXXXXG-----IXXXXXXXXXXXXXXXXXSHVS 57
           MA+ITA LERSLQNCSL                                       SH+S
Sbjct: 1   MAAITASLERSLQNCSLNHHRHHQSSGGREERSSSSDETDSQNHLLQNSDTSLELKSHLS 60

Query: 56  LPYHWEQCLDLKTGEIYY 3
           LPYHWEQCLDLKTGEIYY
Sbjct: 61  LPYHWEQCLDLKTGEIYY 78


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