BLASTX nr result
ID: Coptis25_contig00041348
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041348 (263 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 75 4e-12 gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 73 3e-11 gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ... 72 5e-11 gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat... 65 4e-09 ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm... 62 5e-08 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 75.5 bits (184), Expect = 4e-12 Identities = 33/84 (39%), Positives = 53/84 (63%) Frame = +1 Query: 7 PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186 P ADKV+ +L+ W+ L + G + LVKSV+ L+ + SIYSWP +LK+M+ I +F+ Sbjct: 513 PIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 572 Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258 W+ D ++ ++ V K+C EE Sbjct: 573 WSGDVTKRKMVTVAWRKICADYEE 596 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 72.8 bits (177), Expect = 3e-11 Identities = 32/84 (38%), Positives = 51/84 (60%) Frame = +1 Query: 7 PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186 P DK++T+LS W+ + + G V L+KSV LI + +IY WP LLK+++T +F+ Sbjct: 419 PIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFI 478 Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258 W+ D ++ L+ V KLC P + Sbjct: 479 WSGDITKRKLVTVAWKKLCKPQSQ 502 >gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula] Length = 161 Score = 72.0 bits (175), Expect = 5e-11 Identities = 32/84 (38%), Positives = 51/84 (60%) Frame = +1 Query: 7 PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186 P DK+ +LS W+ L + G V +VKSVI L S ++Y+WP LLK ++ I +F+ Sbjct: 54 PIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFI 113 Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258 W+ D +++ L+ V KLC P ++ Sbjct: 114 WSGDTSKRKLVTVAWKKLCRPFDQ 137 >gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula] Length = 480 Score = 65.5 bits (158), Expect = 4e-09 Identities = 28/76 (36%), Positives = 47/76 (61%) Frame = +1 Query: 16 DKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFVWTD 195 D+++ + + W+ L + G V LVKS+IH L++SF IY WP LL ++D+ I +F+W+ Sbjct: 244 DRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSWIKNFIWSG 303 Query: 196 DPNQKPLIIVVSHKLC 243 D + +HK+C Sbjct: 304 D--------IYTHKVC 311 >ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis] gi|223537826|gb|EEF39443.1| conserved hypothetical protein [Ricinus communis] Length = 303 Score = 62.0 bits (149), Expect = 5e-08 Identities = 29/83 (34%), Positives = 43/83 (51%) Frame = +1 Query: 10 TADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFVW 189 T D + + W+ R FM G + L+ SVI L+ +F +Y WP LLK ++ I +F+W Sbjct: 155 TMDNILVKFDNWKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLW 214 Query: 190 TDDPNQKPLIIVVSHKLCDPTEE 258 T + K L+ V C P E Sbjct: 215 TGSVSYKKLVTVKWGHCCKPISE 237