BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041348
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    75   4e-12
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    73   3e-11
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    72   5e-11
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    65   4e-09
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    62   5e-08

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 33/84 (39%), Positives = 53/84 (63%)
 Frame = +1

Query: 7   PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186
           P ADKV+ +L+ W+  L  + G + LVKSV+   L+ + SIYSWP  +LK+M+  I +F+
Sbjct: 513 PIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 572

Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258
           W+ D  ++ ++ V   K+C   EE
Sbjct: 573 WSGDVTKRKMVTVAWRKICADYEE 596


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%)
 Frame = +1

Query: 7   PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186
           P  DK++T+LS W+  +  + G V L+KSV    LI + +IY WP  LLK+++T   +F+
Sbjct: 419 PIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFI 478

Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258
           W+ D  ++ L+ V   KLC P  +
Sbjct: 479 WSGDITKRKLVTVAWKKLCKPQSQ 502


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%)
 Frame = +1

Query: 7   PTADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFV 186
           P  DK+  +LS W+  L  + G V +VKSVI   L  S ++Y+WP  LLK ++  I +F+
Sbjct: 54  PIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFI 113

Query: 187 WTDDPNQKPLIIVVSHKLCDPTEE 258
           W+ D +++ L+ V   KLC P ++
Sbjct: 114 WSGDTSKRKLVTVAWKKLCRPFDQ 137


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 28/76 (36%), Positives = 47/76 (61%)
 Frame = +1

Query: 16  DKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFVWTD 195
           D+++ + + W+  L  + G V LVKS+IH  L++SF IY WP  LL ++D+ I +F+W+ 
Sbjct: 244 DRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSWIKNFIWSG 303

Query: 196 DPNQKPLIIVVSHKLC 243
           D        + +HK+C
Sbjct: 304 D--------IYTHKVC 311


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/83 (34%), Positives = 43/83 (51%)
 Frame = +1

Query: 10  TADKVRTQLSCWEWRLFFMKGTVHLVKSVIHIQLIFSFSIYSWPFHLLKKMDTGIGSFVW 189
           T D +  +   W+ R  FM G + L+ SVI   L+ +F +Y WP  LLK ++  I +F+W
Sbjct: 155 TMDNILVKFDNWKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLW 214

Query: 190 TDDPNQKPLIIVVSHKLCDPTEE 258
           T   + K L+ V     C P  E
Sbjct: 215 TGSVSYKKLVTVKWGHCCKPISE 237