BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041331
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   257   9e-67
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   239   2e-61
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   237   9e-61
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   236   2e-60
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...   233   2e-59

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  257 bits (656), Expect = 9e-67
 Identities = 129/177 (72%), Positives = 147/177 (83%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A+E GREIHE+V++TGW  DVFVGAALI MYAKCG V S R+VFDKIL RD VLWNSM+A
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
           AYSQNG+ +A L+LC EM +TGLR +EATLVT I+AS+D AALP+GRE+HG S R  FES
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFES 310

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
            DKV TA VDMYAKCG+V VAR LF+ L  KRVVSWNAMI GYAMHGHA+EAL LFE
Sbjct: 311 HDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFE 367



 Score =  124 bits (312), Expect = 7e-27
 Identities = 62/175 (35%), Positives = 99/175 (56%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A++ G+++H  V   G+G D  +   L+ +Y  C ++ S R +FD+I   ++ LWN +I 
Sbjct: 90  AIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIR 149

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
            Y+ NG   AA+ L  +M   GL     T   V+ A + ++A+  GRE+H   ++ G+E 
Sbjct: 150 GYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALAL 527
              V  A +DMYAKCG V  AR +FD +  +  V WN+M+A Y+ +GH    L+L
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSL 264



 Score = 65.5 bits (158), Expect = 5e-09
 Identities = 40/106 (37%), Positives = 57/106 (53%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           AL QGRE+H    R  +     V  AL+ MYAKCG+V   R +F+++  + VV WN+MI 
Sbjct: 292 ALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMIT 351

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRG 320
            Y+ +G++  AL L  EM     +    T V V++A S    L  G
Sbjct: 352 GYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEG 396


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  239 bits (610), Expect = 2e-61
 Identities = 117/174 (67%), Positives = 138/174 (79%)
 Frame = +3

Query: 12  QGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAAYS 191
           +GR IHE VIR+GW  DVFVGAAL+ MYAKCG V   R VFDKI+ RD VLWNSM+AAY+
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236

Query: 192 QNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFESQDK 371
           QNG+ + +L+LC EM   G+R +EATLVTVI++S+DIA LP GRE+HGF  RHGF+  DK
Sbjct: 237 QNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDK 296

Query: 372 VNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
           V TA +DMYAKCG+V VA  LF+ L EKRVVSWNA+I GYAMHG A EAL LFE
Sbjct: 297 VKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFE 350



 Score =  124 bits (312), Expect = 7e-27
 Identities = 64/175 (36%), Positives = 102/175 (58%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           ALE G+++H  + + G   ++ +   L+  Y+ C ++ +   +FDKI   ++ LWN +I 
Sbjct: 73  ALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIR 132

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
           AY+ NG    A++L  +M   GL+    TL  V+ A S ++ +  GR +H   +R G+E 
Sbjct: 133 AYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWER 192

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALAL 527
              V  A VDMYAKCG V  AR +FD + ++  V WN+M+A YA +GH  E+L+L
Sbjct: 193 DVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSL 247



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 4/180 (2%)
 Frame = +3

Query: 6   LEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAA 185
           L  GREIH    R G+  +  V  ALI MYAKCG+V+    +F+++  + VV WN++I  
Sbjct: 276 LPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITG 335

Query: 186 YSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRH-GFES 362
           Y+ +G +  AL L   M +   +    T V  +AA S    L  GR ++   +R      
Sbjct: 336 YAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINP 394

Query: 363 QDKVNTAFVDMYAKCGAVWVARTL---FDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
             +  T  VD+   CG +  A  L    D + +  V  W A++     HG+   A    E
Sbjct: 395 TVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGV--WGALLNSCKTHGNVELAEVALE 452


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  237 bits (604), Expect = 9e-61
 Identities = 114/177 (64%), Positives = 141/177 (79%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A+ +GR IHE VI++GW  D+FVGAALI MYAKCG V    +VFDKI+ RD VLWNSM+A
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
           AY+QNG+ + +++LCREM   G+R +EATLVTVI++S+D+A LP GRE+HGF  RHGF+S
Sbjct: 223 AYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQS 282

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
            DKV TA +DMYAKCG+V VA  LF+ L EKRVVSWNA+I GYAMHG A  AL LF+
Sbjct: 283 NDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFD 339



 Score =  116 bits (291), Expect = 2e-24
 Identities = 61/175 (34%), Positives = 99/175 (56%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           AL  G+++H      G   +  +   L+ +YA   ++ + R +FDKI  +++ LWN +I 
Sbjct: 62  ALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIR 121

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
            Y+ NG  + A+ L  +M   GLR    TL  V+ A S ++A+  GR +H + ++ G+E 
Sbjct: 122 GYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWER 181

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALAL 527
              V  A +DMYAKCG V  A  +FD +  +  V WN+M+A YA +GH  E+++L
Sbjct: 182 DLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISL 236



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
 Frame = +3

Query: 6   LEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAA 185
           L  GREIH    R G+  +  V  ALI MYAKCG+V+    +F+++  + VV WN++I  
Sbjct: 265 LPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITG 324

Query: 186 YSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLR-HGFES 362
           Y+ +G +  AL L  +M     R    T V V+AA S    L  GR ++   +R +G   
Sbjct: 325 YAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITP 383

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVS-WNAMIAGYAMHGHASEA 518
             +  T  +D+   CG +  A  L   ++ K     W A++    +HG+   A
Sbjct: 384 TVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELA 436


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  236 bits (602), Expect = 2e-60
 Identities = 118/177 (66%), Positives = 142/177 (80%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A+E+G++IH++VIR+G   DVFVGAALI MYAKCG VES R+VFDKI  RDVV WNSM+A
Sbjct: 117 AMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLA 176

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
            YSQNG  + +LALCR M   GL+ +E T V  IAAS+D   LP+G+E+HG+S RHGFES
Sbjct: 177 TYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFES 236

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
            DKV TA +DMYAK G+V VAR+LF+ L EKRVVSWNAMI GYAMHGHA+EAL LF+
Sbjct: 237 NDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFK 293



 Score =  126 bits (316), Expect = 2e-27
 Identities = 63/175 (36%), Positives = 103/175 (58%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A+E G+++H  + + G   +  +   L+ +Y  C ++ +   +FD+I  R++ LWN MI 
Sbjct: 16  AIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIR 75

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
            Y+ NG    A++L  +M   GL   + T   V+ A S ++A+  G+++H   +R G ES
Sbjct: 76  GYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLES 135

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALAL 527
              V  A +DMYAKCG V  AR +FD ++E+ VV WN+M+A Y+ +G   E+LAL
Sbjct: 136 DVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLAL 190



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
 Frame = +3

Query: 6   LEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAA 185
           L QG+E+H    R G+  +  V  AL+ MYAK G+V   R +F+ +  + VV WN+MI  
Sbjct: 219 LPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG 278

Query: 186 YSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFESQ 365
           Y+ +G++N AL L +EM    L     T V V+AA S    L  G+ +H  S+   F   
Sbjct: 279 YAMHGHANEALDLFKEMKGKVLP-DHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIW 336

Query: 366 DKVN--TAFVDMYAKCGAVWVARTLFDGLN-EKRVVSWNAMIAGYAMHGH 506
             V   T  +D+   CG +  A  L   +  E     W A++    +HG+
Sbjct: 337 PTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGN 386


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  233 bits (593), Expect = 2e-59
 Identities = 113/177 (63%), Positives = 141/177 (79%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           A+E GR IHE V+R+GW  DVFVGAALI MY+KCG V++ R+VF K   RD VLWNSM+A
Sbjct: 203 AIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSMLA 262

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
           AYSQNG  + +LALC EM + G+R +EATLVTVI+AS+DIAALP+GRE+HGF+ R  FES
Sbjct: 263 AYSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAWRRRFES 322

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALALFE 533
            DKV T  +DMYAKCG + VA+ LF+ L +K VVSWNA+I GYAMHG+++E L LF+
Sbjct: 323 NDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHGYSNEVLILFD 379



 Score =  102 bits (255), Expect = 3e-20
 Identities = 58/175 (33%), Positives = 94/175 (53%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           AL  G+++H ++   G   D  +   L+ +Y  C ++   R +FDKI  R++ LWN +I 
Sbjct: 102 ALIPGKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNLFLWNVLIR 161

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSDIAALPRGREVHGFSLRHGFES 362
            Y+  G   A++ L  ++   GL     T   V+ A S ++A+  GR +H   +R G+E 
Sbjct: 162 GYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWER 221

Query: 363 QDKVNTAFVDMYAKCGAVWVARTLFDGLNEKRVVSWNAMIAGYAMHGHASEALAL 527
              V  A +DMY+KCG V  AR +F     +  V WN+M+A Y+ +G   ++LAL
Sbjct: 222 DVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPDKSLAL 276



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/99 (36%), Positives = 55/99 (55%)
 Frame = +3

Query: 3   ALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIA 182
           AL QGRE+H    R  +  +  V   LI MYAKCG ++  + +F+++  ++VV WN++I 
Sbjct: 304 ALPQGRELHGFAWRRRFESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIIT 363

Query: 183 AYSQNGYSNAALALCREMGVTGLRLSEATLVTVIAASSD 299
            Y+ +GYSN  L L   M     +    T V V+ A S+
Sbjct: 364 GYAMHGYSNEVLILFDRMREEA-KPDHITFVGVLLACSN 401