BLASTX nr result
ID: Coptis25_contig00041327
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00041327
(351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera] 182 2e-44
ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi... 182 3e-44
ref|XP_002532248.1| pentatricopeptide repeat-containing protein,... 181 4e-44
ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containi... 174 5e-42
ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|2... 171 4e-41
>emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 182 bits (462), Expect = 2e-44
Identities = 85/112 (75%), Positives = 97/112 (86%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
V EMKK SYPNLITYSTL+ GLC +GRL+EAI++FEEMVSKD+ILPD LTYN LINGF
Sbjct: 266 VEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGF 325
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 337
C G KVDRA KIM+FM+KN C PN+FNYS+LMNG+CKE R EEAKEVFDEM+
Sbjct: 326 CHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 377
Score = 93.2 bits (230), Expect = 2e-17
Identities = 44/111 (39%), Positives = 68/111 (61%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
+ E K PN+ YS LM G C GRL+EA +VF+EM S + PDT+ Y LIN F
Sbjct: 337 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG-LKPDTVGYTTLINFF 395
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
CR G+VD A +++ M +N+C+ + ++ ++ G C+E R+EEA + + +
Sbjct: 396 CRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERL 446
Score = 60.1 bits (144), Expect = 2e-07
Identities = 26/96 (27%), Positives = 58/96 (60%)
Frame = +2
Query: 35 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARK 214
P+ + Y+TL+ C AGR+ EA+++ ++M +++ DT+T+N+++ G CR G+ + A
Sbjct: 383 PDTVGYTTLINFFCRAGRVDEAMELLKDMX-ENKCRADTVTFNVILGGLCREGRFEEAXG 441
Query: 215 IMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEV 322
+++ + N +Y ++N C+E ++A ++
Sbjct: 442 MLERLPYEGVYLNKASYRIVLNSLCREGELQKATQL 477
>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 182 bits (461), Expect = 3e-44
Identities = 85/112 (75%), Positives = 97/112 (86%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
V EMKK SYPNLITYSTL+ GLC +GRL+EAI++FEEMVSKD+ILPD LTYN LINGF
Sbjct: 223 VEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGF 282
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 337
C G KVDRA KIM+FM+KN C PN+FNYS+LMNG+CKE R EEAKEVFDEM+
Sbjct: 283 CHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334
Score = 96.7 bits (239), Expect = 2e-18
Identities = 45/111 (40%), Positives = 70/111 (63%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
+ E K PN+ YS LM G C GRL+EA +VF+EM S + PDT+ Y LIN F
Sbjct: 294 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG-LKPDTVGYTTLINFF 352
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
CR G+VD A +++ MR+N+C+ + ++ ++ G C+E R+EEA+ + + +
Sbjct: 353 CRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERL 403
Score = 62.4 bits (150), Expect = 4e-08
Identities = 27/96 (28%), Positives = 59/96 (61%)
Frame = +2
Query: 35 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARK 214
P+ + Y+TL+ C AGR+ EA+++ ++M +++ DT+T+N+++ G CR G+ + AR
Sbjct: 340 PDTVGYTTLINFFCRAGRVDEAMELLKDM-RENKCRADTVTFNVILGGLCREGRFEEARG 398
Query: 215 IMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEV 322
+++ + N +Y ++N C+E ++A ++
Sbjct: 399 MLERLPYEGVYLNKASYRIVLNSLCREGELQKATQL 434
>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 521
Score = 181 bits (460), Expect = 4e-44
Identities = 84/116 (72%), Positives = 99/116 (85%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
++EMKK +SYPN+ITYSTL+ GLC GRL+EAI++FEEMVSKD+ILPD LTY++LI GF
Sbjct: 222 MHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGF 281
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRL 349
C GGK DRARKIM+FMR N C PN+FNYS LMNG+CKE R EEAKEVFDEM+ S L
Sbjct: 282 CHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGL 337
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Frame = +2
Query: 35 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARK 214
P+L ST + L ++ ++ A + + ++ P+T +NIL+ C+ G ++ A +
Sbjct: 161 PSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALE 220
Query: 215 IMDFMRKN-ECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
+M M+K+ PN+ YS+L++G C R +EA E+F+EM
Sbjct: 221 VMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEM 261
Score = 57.4 bits (137), Expect = 1e-06
Identities = 26/93 (27%), Positives = 53/93 (56%)
Frame = +2
Query: 35 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARK 214
P+ + Y+TL+ C GR+ EA+++ +EM + D +T+N+L+ G CR G+ D A +
Sbjct: 339 PDTVGYTTLINCFCGVGRIDEAMELLKEMTEM-KCKADAVTFNVLLKGLCREGRFDEALR 397
Query: 215 IMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEA 313
+++ + N +Y ++N C++ E++
Sbjct: 398 MLENLAYEGVYLNKGSYRIVLNFLCQKGELEKS 430
>ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 174 bits (442), Expect = 5e-42
Identities = 80/112 (71%), Positives = 95/112 (84%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
V EMK SYPNL+TYSTL+GGLC+ G+L+EAI+ FEEMVSKD ILPD LTYNILINGF
Sbjct: 213 VKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGF 272
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 337
C+ GKVDRAR I++FM+ N C PN+FNYS LMNGYCKE R +EAKEVF+E++
Sbjct: 273 CQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIK 324
Score = 88.2 bits (217), Expect = 6e-16
Identities = 41/109 (37%), Positives = 66/109 (60%)
Frame = +2
Query: 8 EMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCR 187
E K PN+ YS LM G C GRLQEA +VF E+ S + PDT++Y LIN CR
Sbjct: 286 EFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG-MKPDTISYTTLINCLCR 344
Query: 188 GGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
G+VD A +++ M+ +C+ + ++ ++ G C+E R++EA ++ ++
Sbjct: 345 TGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKL 393
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 35 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARK 214
P+L ST + L ++ R+ A ++ SK + P+T +NIL+ CR G + A +
Sbjct: 152 PSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFE 211
Query: 215 IMDFMRKNECQ-PNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
++ M+ PN+ YS+L+ G C+ + +EA E F+EM
Sbjct: 212 VVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEM 252
Score = 57.4 bits (137), Expect = 1e-06
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +2
Query: 5 NEMKK-GEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
NE+K G K P+ I+Y+TL+ LC GR+ EA ++ ++M KD DT+T+N+++ G
Sbjct: 321 NEIKSLGMK--PDTISYTTLINCLCRTGRVDEATELLQQMKDKD-CRADTVTFNVMLGGL 377
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 334
CR G+ D A ++ + N +Y ++N ++ +A E+ M
Sbjct: 378 CREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLM 428
>ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|222842808|gb|EEE80355.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 171 bits (434), Expect = 4e-41
Identities = 79/112 (70%), Positives = 96/112 (85%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
V EMKK SYPNLITYSTLM GLC++GRL+EAI++FEEMVSKD+ILPD LTYN+LINGF
Sbjct: 213 VKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGF 272
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 337
GKVDRA+KIM+FM+ N C PN+FNYS+LM+G+CKE R EEA + F+EM+
Sbjct: 273 SCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMK 324
Score = 86.7 bits (213), Expect = 2e-15
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +2
Query: 2 VNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGF 181
+ E K PN+ YS LM G C GRL+EA+ FEEM + DT+ Y ILIN F
Sbjct: 284 IMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFG-LKQDTVGYTILINYF 342
Query: 182 CRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEA 313
CR G++D A +++ M++ +C+ +I + L+ G+C E R EEA
Sbjct: 343 CRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEA 386