BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041322
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...   197   7e-49
ref|XP_002881503.1| pentatricopeptide repeat-containing protein ...   178   4e-43
ref|NP_181268.1| pentatricopeptide repeat-containing protein [Ar...   176   1e-42
ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containi...   174   5e-42
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...   174   9e-42

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  197 bits (501), Expect = 7e-49
 Identities = 97/135 (71%), Positives = 112/135 (82%)
 Frame = -1

Query: 407 EAANFISKMPLEPSAKVWGALLNGVSVSGDVELGKFVCDRLFELEPENSWNYIIMANLYS 228
           EAA FI KMP+EP+AKVWGALLNGVSVSGDVELGKFVCD LF +EPEN+ NY+IMANLYS
Sbjct: 528 EAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYS 587

Query: 227 QAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGGVVSFIAGDGSNPMMEEIFVVLEILVQ 48
           QAGRWEEAE +REKMK +GLKK+PG SWIETSGG+ SFIA D S+   EEI+ +LE L+ 
Sbjct: 588 QAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEIYGMLEGLLG 647

Query: 47  MMGKESYVAIVELDE 3
           +M +E Y    ELDE
Sbjct: 648 LMREEGYTLQDELDE 662


>ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327342|gb|EFH57762.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 669

 Score =  178 bits (452), Expect = 4e-43
 Identities = 86/134 (64%), Positives = 105/134 (78%)
 Frame = -1

Query: 404 AANFISKMPLEPSAKVWGALLNGVSVSGDVELGKFVCDRLFELEPENSWNYIIMANLYSQ 225
           A  FISKMP+EP AKVWGALLNG SV GDVE+ +F CDRLFE+EPEN+ NY IMANLY+Q
Sbjct: 522 AMEFISKMPIEPIAKVWGALLNGASVLGDVEIARFACDRLFEMEPENTGNYTIMANLYTQ 581

Query: 224 AGRWEEAEKVREKMKNMGLKKVPGCSWIETSGGVVSFIAGDGSNPMMEEIFVVLEILVQM 45
           AGRWEEAE VR+KMK +GLKK+PG SWIET+ G+ SFIA D S    +E++ ++E LV+ 
Sbjct: 582 AGRWEEAEVVRDKMKRIGLKKIPGTSWIETNKGLRSFIAKDSSCERSKEMYDIIEGLVES 641

Query: 44  MGKESYVAIVELDE 3
           M  + Y+   ELDE
Sbjct: 642 MSDKEYIMKQELDE 655


>ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g37310 gi|4056485|gb|AAC98051.1| hypothetical protein
           [Arabidopsis thaliana] gi|110741249|dbj|BAF02175.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254288|gb|AEC09382.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  176 bits (447), Expect = 1e-42
 Identities = 84/135 (62%), Positives = 104/135 (77%)
 Frame = -1

Query: 407 EAANFISKMPLEPSAKVWGALLNGVSVSGDVELGKFVCDRLFELEPENSWNYIIMANLYS 228
           +A  FISKMP++P AKVWGALLNG SV GD+E+ +F CDRLFE+EPEN+ NY IMANLY+
Sbjct: 521 DAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYT 580

Query: 227 QAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGGVVSFIAGDGSNPMMEEIFVVLEILVQ 48
           QAGRWEEAE VR KMK +GLKK+PG SWIET  G+ SFIA D S    +E++ ++E LV+
Sbjct: 581 QAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSKEMYEIIEGLVE 640

Query: 47  MMGKESYVAIVELDE 3
            M  + Y+   ELDE
Sbjct: 641 SMSDKEYIRKQELDE 655


>ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  174 bits (442), Expect = 5e-42
 Identities = 85/134 (63%), Positives = 107/134 (79%)
 Frame = -1

Query: 407 EAANFISKMPLEPSAKVWGALLNGVSVSGDVELGKFVCDRLFELEPENSWNYIIMANLYS 228
           EA  FIS+MP+EPSAKVWG LL+G SV GDVE+GKF CD LFE+EPEN+ NYIIMANLY+
Sbjct: 528 EAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIMANLYA 587

Query: 227 QAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGGVVSFIAGDGSNPMMEEIFVVLEILVQ 48
            AG+WE+A +VRE+MK +GL+K+ G SWIETSGG++SFIA D SN   +EI+ +LE L+ 
Sbjct: 588 HAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEIYALLEGLLG 647

Query: 47  MMGKESYVAIVELD 6
           +M +E  V   ELD
Sbjct: 648 LMREEGCVLQEELD 661


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  174 bits (440), Expect = 9e-42
 Identities = 86/135 (63%), Positives = 106/135 (78%)
 Frame = -1

Query: 407 EAANFISKMPLEPSAKVWGALLNGVSVSGDVELGKFVCDRLFELEPENSWNYIIMANLYS 228
           EA  F+SKMP+EPSAKVWGALL+G S+S DVELGK VCD LFE+EPEN+ NY+IMANLYS
Sbjct: 515 EAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYS 574

Query: 227 QAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGGVVSFIAGDGSNPMMEEIFVVLEILVQ 48
           QAGRW+EA++VRE+M  +GL+K+PG SWIETS G+ SFIA D     +EEI V+L+ L+ 
Sbjct: 575 QAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEIHVILKGLLG 634

Query: 47  MMGKESYVAIVELDE 3
           +M  E  V    LDE
Sbjct: 635 LMRDEGKVLQDMLDE 649