BLASTX nr result
ID: Coptis25_contig00041306
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041306 (410 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBL94133.1| putative polyprotein (retrotransposon protein) [... 109 3e-22 emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera] 105 3e-21 gb|AAO45752.1| pol protein [Cucumis melo subsp. melo] 102 2e-20 emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera] 102 4e-20 gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Jap... 102 4e-20 >emb|CBL94133.1| putative polyprotein (retrotransposon protein) [Malus x domestica] Length = 362 Score = 109 bits (272), Expect = 3e-22 Identities = 70/153 (45%), Positives = 92/153 (60%), Gaps = 17/153 (11%) Frame = -3 Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229 GEK +F+DHKSLQYLFTQ DLNLRQ RW E + D+ TI+YHPG+ANVVADALSR+P+ Sbjct: 145 GEKCKIFTDHKSLQYLFTQHDLNLRQRRWLELLSDYDCTIEYHPGRANVVADALSRKPQG 204 Query: 228 -----------MVADMMS----MEWKASRTEDELSRAFLACVKVTPTLITRVIQA*QQDP 94 ++A++ S +EW +E S AFLA +V P LI RV+ A D Sbjct: 205 RLNALYTSRVPLLAELRSTGVELEW------EEQSEAFLANFQVKPILIDRVLAAQSLDE 258 Query: 93 LMRDRITQLLNQG--VEYFTVGSDGGLRFRERL 1 +++ I L N+G + GSDG L R+ Sbjct: 259 EIQELI-NLRNEGKKKDLKIRGSDGMLMQENRM 290 >emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera] Length = 1387 Score = 105 bits (263), Expect = 3e-21 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 9/145 (6%) Frame = -3 Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229 GEKF ++SDHKSL+Y+FTQKDLN RQ RW E + D+ F + YHPGKANVVADALSR+ Sbjct: 821 GEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRKSVG 880 Query: 228 MVADMMSMEWKASRTEDELSRAF--------LACVKVTPTLITRVIQA*QQDPLMRDRIT 73 ++ + E++ ++ L + P +I R+++A D + T Sbjct: 881 QLSSLELREFEMHTVIEDFELCLGLEGHGPCLYSISARPXVIQRIVEAQVHDEFLEKVKT 940 Query: 72 QLLNQGV-EYFTVGSDGGLRFRERL 1 QL+ + E +++ DG +RF+ RL Sbjct: 941 QLVAGEIDENWSMYEDGSVRFKGRL 965 >gb|AAO45752.1| pol protein [Cucumis melo subsp. melo] Length = 923 Score = 102 bits (255), Expect = 2e-20 Identities = 66/148 (44%), Positives = 85/148 (57%), Gaps = 12/148 (8%) Frame = -3 Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229 GEK +F+DHKSL+Y FTQK+LN+RQ RW E + D+ I YHPGKANVVADALSR+ Sbjct: 348 GEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK--- 404 Query: 228 MVADMMSMEWKASRTEDELSRA-----------FLACVKVTPTLITRVIQA*QQDP-LMR 85 V+ ++ + + +L RA LA + V PTL R+I A DP L+ Sbjct: 405 -VSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVE 463 Query: 84 DRITQLLNQGVEYFTVGSDGGLRFRERL 1 R Q E F++ SDGGL F RL Sbjct: 464 KRGLAEAGQTAE-FSLSSDGGLLFERRL 490 >emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera] Length = 1573 Score = 102 bits (253), Expect = 4e-20 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%) Frame = -3 Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229 GEKF ++SDHKSL+Y+FTQKDLN RQ RW E + D+ F + YHPGKANVVADALSR+ Sbjct: 1042 GEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRKSYG 1101 Query: 228 MVADMMSMEWKASRTEDELSRAF--------LACVKVTPTLITRVIQA*QQDPLMRDRIT 73 + + E++ ++ L + P +I R+++A D + Sbjct: 1102 QLFSLGLREFEMYAVIEDFELCLVQEGRGPCLYSISARPMVIQRIVEAQVHDEFLEKVKA 1161 Query: 72 QLLNQGV-EYFTVGSDGGLRFRERL 1 QL+ + E +++ DG +RF+ RL Sbjct: 1162 QLVAGEIDENWSMYEDGSVRFKGRL 1186 >gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Japonica Group] gi|108709292|gb|ABF97087.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 1475 Score = 102 bits (253), Expect = 4e-20 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%) Frame = -3 Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229 G + +++DHKS +Y+FTQ DLNLRQ RW E I D+ I YHPGKANVVADALSR+ Sbjct: 893 GNRCEIYTDHKSFKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHC 952 Query: 228 MVADMMSMEWKASRTEDEL-----SRAFLACVKVTPTLITRVIQA*QQDPLMRDRITQLL 64 D+ + + ++ + L SR FLA ++ PTL+ ++ +A + DP MR + + Sbjct: 953 NTLDVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQICEAQKNDPDMRGLLKNMK 1012 Query: 63 NQGVEYFTVGSDGGL 19 FT G L Sbjct: 1013 QGKAAGFTEDEHGTL 1027