BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041306
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBL94133.1| putative polyprotein (retrotransposon protein) [...   109   3e-22
emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]   105   3e-21
gb|AAO45752.1| pol protein [Cucumis melo subsp. melo]                 102   2e-20
emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]   102   4e-20
gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Jap...   102   4e-20

>emb|CBL94133.1| putative polyprotein (retrotransposon protein) [Malus x domestica]
          Length = 362

 Score =  109 bits (272), Expect = 3e-22
 Identities = 70/153 (45%), Positives = 92/153 (60%), Gaps = 17/153 (11%)
 Frame = -3

Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229
           GEK  +F+DHKSLQYLFTQ DLNLRQ RW E + D+  TI+YHPG+ANVVADALSR+P+ 
Sbjct: 145 GEKCKIFTDHKSLQYLFTQHDLNLRQRRWLELLSDYDCTIEYHPGRANVVADALSRKPQG 204

Query: 228 -----------MVADMMS----MEWKASRTEDELSRAFLACVKVTPTLITRVIQA*QQDP 94
                      ++A++ S    +EW      +E S AFLA  +V P LI RV+ A   D 
Sbjct: 205 RLNALYTSRVPLLAELRSTGVELEW------EEQSEAFLANFQVKPILIDRVLAAQSLDE 258

Query: 93  LMRDRITQLLNQG--VEYFTVGSDGGLRFRERL 1
            +++ I  L N+G   +    GSDG L    R+
Sbjct: 259 EIQELI-NLRNEGKKKDLKIRGSDGMLMQENRM 290


>emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
          Length = 1387

 Score =  105 bits (263), Expect = 3e-21
 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 9/145 (6%)
 Frame = -3

Query: 408  GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229
            GEKF ++SDHKSL+Y+FTQKDLN RQ RW E + D+ F + YHPGKANVVADALSR+   
Sbjct: 821  GEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRKSVG 880

Query: 228  MVADMMSMEWKASRTEDELSRAF--------LACVKVTPTLITRVIQA*QQDPLMRDRIT 73
             ++ +   E++     ++             L  +   P +I R+++A   D  +    T
Sbjct: 881  QLSSLELREFEMHTVIEDFELCLGLEGHGPCLYSISARPXVIQRIVEAQVHDEFLEKVKT 940

Query: 72   QLLNQGV-EYFTVGSDGGLRFRERL 1
            QL+   + E +++  DG +RF+ RL
Sbjct: 941  QLVAGEIDENWSMYEDGSVRFKGRL 965


>gb|AAO45752.1| pol protein [Cucumis melo subsp. melo]
          Length = 923

 Score =  102 bits (255), Expect = 2e-20
 Identities = 66/148 (44%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
 Frame = -3

Query: 408 GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229
           GEK  +F+DHKSL+Y FTQK+LN+RQ RW E + D+   I YHPGKANVVADALSR+   
Sbjct: 348 GEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK--- 404

Query: 228 MVADMMSMEWKASRTEDELSRA-----------FLACVKVTPTLITRVIQA*QQDP-LMR 85
            V+   ++  + +    +L RA            LA + V PTL  R+I A   DP L+ 
Sbjct: 405 -VSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVE 463

Query: 84  DRITQLLNQGVEYFTVGSDGGLRFRERL 1
            R      Q  E F++ SDGGL F  RL
Sbjct: 464 KRGLAEAGQTAE-FSLSSDGGLLFERRL 490


>emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]
          Length = 1573

 Score =  102 bits (253), Expect = 4e-20
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
 Frame = -3

Query: 408  GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229
            GEKF ++SDHKSL+Y+FTQKDLN RQ RW E + D+ F + YHPGKANVVADALSR+   
Sbjct: 1042 GEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRKSYG 1101

Query: 228  MVADMMSMEWKASRTEDELSRAF--------LACVKVTPTLITRVIQA*QQDPLMRDRIT 73
             +  +   E++     ++             L  +   P +I R+++A   D  +     
Sbjct: 1102 QLFSLGLREFEMYAVIEDFELCLVQEGRGPCLYSISARPMVIQRIVEAQVHDEFLEKVKA 1161

Query: 72   QLLNQGV-EYFTVGSDGGLRFRERL 1
            QL+   + E +++  DG +RF+ RL
Sbjct: 1162 QLVAGEIDENWSMYEDGSVRFKGRL 1186


>gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Japonica Group]
            gi|108709292|gb|ABF97087.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1475

 Score =  102 bits (253), Expect = 4e-20
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
 Frame = -3

Query: 408  GEKFTLFSDHKSLQYLFTQKDLNLRQLRWQEYIMDFRFTIQYHPGKANVVADALSRRPEA 229
            G +  +++DHKS +Y+FTQ DLNLRQ RW E I D+   I YHPGKANVVADALSR+   
Sbjct: 893  GNRCEIYTDHKSFKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHC 952

Query: 228  MVADMMSMEWKASRTEDEL-----SRAFLACVKVTPTLITRVIQA*QQDPLMRDRITQLL 64
               D+  +  + ++  + L     SR FLA ++  PTL+ ++ +A + DP MR  +  + 
Sbjct: 953  NTLDVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQICEAQKNDPDMRGLLKNMK 1012

Query: 63   NQGVEYFTVGSDGGL 19
                  FT    G L
Sbjct: 1013 QGKAAGFTEDEHGTL 1027