BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041240
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ...    57   1e-06
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...    57   2e-06
emb|CAA06829.1| DYW7 protein [Arabidopsis thaliana]                    57   2e-06
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
gb|AFG48749.1| Pinus taeda anonymous locus 0_2087_01 genomic seq...    55   8e-06

>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517031|gb|AES98654.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 887

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +3

Query: 3   KFISLRYGRDIYLYDSKRLHHFKNGQCSCRDYW 101
           K+IS+ YG +IYL DS  LHHFK G CSCRDYW
Sbjct: 855 KYISMAYGCEIYLSDSNCLHHFKGGHCSCRDYW 887


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
           gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
           [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 894

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   KFISLRYGRDIYLYDSKRLHHFKNGQCSCRDYW 101
           K++S RYG DI L D++ LHHFKNG CSC+DYW
Sbjct: 862 KYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 894


>emb|CAA06829.1| DYW7 protein [Arabidopsis thaliana]
          Length = 406

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   KFISLRYGRDIYLYDSKRLHHFKNGQCSCRDYW 101
           K++S RYG DI L D++ LHHFKNG CSC+DYW
Sbjct: 374 KYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 406


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +3

Query: 3   KFISLRYGRDIYLYDSKRLHHFKNGQCSCRDYW 101
           KF+SL  GRDI   DSKR HHFK G CSC+DYW
Sbjct: 644 KFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676


>gb|AFG48749.1| Pinus taeda anonymous locus 0_2087_01 genomic sequence
          Length = 95

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   KFISLRYGRDIYLYDSKRLHHFKNGQCSCRDYW 101
           KFIS  Y R+I L D+KR HHFK+GQCSCR++W
Sbjct: 63  KFISKVYEREIILRDTKRFHHFKDGQCSCREFW 95