BLASTX nr result

ID: Coptis25_contig00041203 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041203
         (207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82280.1| hypothetical protein VITISV_044064 [Vitis vinifera]    54   4e-11
emb|CBI15549.3| unnamed protein product [Vitis vinifera]               54   1e-10
ref|XP_003634199.1| PREDICTED: uncharacterized GPI-anchored prot...    54   1e-10
ref|XP_002317884.1| predicted protein [Populus trichocarpa] gi|2...    47   2e-07
ref|XP_002533130.1| conserved hypothetical protein [Ricinus comm...    45   3e-07

>emb|CAN82280.1| hypothetical protein VITISV_044064 [Vitis vinifera]
          Length = 328

 Score = 54.3 bits (129), Expect(2) = 4e-11
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +3

Query: 39  GKNRAGQLSRSKSCPVLAAWLYSAYAGTALGQS 137
           GK  +G+L RS+ CPVLAAWLYSAY+GTALG++
Sbjct: 73  GKGASGELRRSRCCPVLAAWLYSAYSGTALGRA 105



 Score = 38.1 bits (87), Expect(2) = 4e-11
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = +1

Query: 154 TPYDLPILPEDSESCVDN 207
           TPYDLP+LP+DSE+CVD+
Sbjct: 114 TPYDLPLLPDDSETCVDD 131


>emb|CBI15549.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score = 54.3 bits (129), Expect(2) = 1e-10
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +3

Query: 39  GKNRAGQLSRSKSCPVLAAWLYSAYAGTALGQS 137
           GK  +G+L RS+ CPVLAAWLYSAY+GTALG++
Sbjct: 72  GKGASGELRRSRCCPVLAAWLYSAYSGTALGRA 104



 Score = 36.2 bits (82), Expect(2) = 1e-10
 Identities = 13/18 (72%), Positives = 18/18 (100%)
 Frame = +1

Query: 154 TPYDLPILPEDSESCVDN 207
           TPYDLP+LP+DSE+CV++
Sbjct: 113 TPYDLPLLPDDSETCVND 130


>ref|XP_003634199.1| PREDICTED: uncharacterized GPI-anchored protein At4g28100-like
           [Vitis vinifera]
          Length = 327

 Score = 54.3 bits (129), Expect(2) = 1e-10
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +3

Query: 39  GKNRAGQLSRSKSCPVLAAWLYSAYAGTALGQS 137
           GK  +G+L RS+ CPVLAAWLYSAY+GTALG++
Sbjct: 72  GKGASGELRRSRCCPVLAAWLYSAYSGTALGRA 104



 Score = 36.2 bits (82), Expect(2) = 1e-10
 Identities = 13/18 (72%), Positives = 18/18 (100%)
 Frame = +1

Query: 154 TPYDLPILPEDSESCVDN 207
           TPYDLP+LP+DSE+CV++
Sbjct: 113 TPYDLPLLPDDSETCVND 130


>ref|XP_002317884.1| predicted protein [Populus trichocarpa] gi|222858557|gb|EEE96104.1|
           predicted protein [Populus trichocarpa]
          Length = 294

 Score = 47.4 bits (111), Expect(2) = 2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
 Frame = +3

Query: 3   NLATCPL-----------A*AMLGKNRAGQLSRSKSCPVLAAWLYSAYAGTALGQSGQ 143
           NLA CPL           +    G + +G L R++ CPVLAAWLYSAY+ TAL ++ +
Sbjct: 41  NLAGCPLELPNELFNGIKSACGSGSSASGHLHRTRCCPVLAAWLYSAYSATALSRANK 98



 Score = 32.3 bits (72), Expect(2) = 2e-07
 Identities = 11/15 (73%), Positives = 15/15 (100%)
 Frame = +1

Query: 160 YDLPILPEDSESCVD 204
           YD+P+LP+DSE+CVD
Sbjct: 111 YDMPLLPDDSETCVD 125


>ref|XP_002533130.1| conserved hypothetical protein [Ricinus communis]
           gi|223527074|gb|EEF29257.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 330

 Score = 45.1 bits (105), Expect(2) = 3e-07
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 45  NRAGQLSRSKSCPVLAAWLYSAYAGTALGQSGQ 143
           N   QL +S+ CPVLAAWLY+AY+ TALG++ +
Sbjct: 75  NGQQQLHKSRCCPVLAAWLYAAYSATALGRAAR 107



 Score = 34.3 bits (77), Expect(2) = 3e-07
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 4/30 (13%)
 Frame = +1

Query: 130 GRAGKMAVTP----YDLPILPEDSESCVDN 207
           GRA ++A       YD+P+LP+DSE+CVD+
Sbjct: 103 GRAARVAPATVAGAYDMPLLPDDSETCVDD 132


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