BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041164
         (362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    67   1e-11
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali...    67   1e-11
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   64   2e-11
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    61   1e-10
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    60   1e-10

>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score = 67.0 bits (162), Expect(2) = 1e-11
 Identities = 30/87 (34%), Positives = 55/87 (63%)
 Frame = -1

Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84
           +++F  G     + I+ +L++F  G GL IN QKT L+  G + + +++++ ++GV Q +
Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307

Query: 83  LPITYLELPLTSTRLGIRDCQPLIENI 3
           LP+ YL +PL S ++   D QPL++ I
Sbjct: 308 LPVRYLGVPLMSQKMKKHDYQPLVDRI 334



 Score = 26.9 bits (58), Expect(2) = 1e-11
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 316 HPKCRKTEIINLCFADDPLCF 254
           HPKC    I +L FADD L F
Sbjct: 231 HPKCLAPMITHLSFADDILVF 251


>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 543

 Score = 67.0 bits (162), Expect(2) = 1e-11
 Identities = 30/87 (34%), Positives = 55/87 (63%)
 Frame = -1

Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84
           +++F  G     + I+ +L++F  G GL IN QKT L+  G + + +++++ ++GV Q +
Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307

Query: 83  LPITYLELPLTSTRLGIRDCQPLIENI 3
           LP+ YL +PL S ++   D QPL++ I
Sbjct: 308 LPVRYLGVPLMSQKMKKHDYQPLVDRI 334



 Score = 26.9 bits (58), Expect(2) = 1e-11
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 316 HPKCRKTEIINLCFADDPLCF 254
           HPKC    I +L FADD L F
Sbjct: 231 HPKCLAPMITHLSFADDILVF 251


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 63.9 bits (154), Expect(2) = 2e-11
 Identities = 32/87 (36%), Positives = 50/87 (57%)
 Frame = -1

Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84
           +M+F  GET+  +E+   L+ FS   GL +NT+KT +   GL+  E+  L   IG  +  
Sbjct: 154 IMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLCAVIGFTRGY 213

Query: 83  LPITYLELPLTSTRLGIRDCQPLIENI 3
           LP+ YL + L+  RL   D QPL++ +
Sbjct: 214 LPVRYLGVSLSPVRLTKSDYQPLLDRV 240



 Score = 29.6 bits (65), Expect(2) = 2e-11
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 316 HPKCRKTEIINLCFADDPLCFSS 248
           HPKC    I +L FADD + F+S
Sbjct: 137 HPKCHSPVITHLAFADDIMIFTS 159


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 61.2 bits (147), Expect(2) = 1e-10
 Identities = 33/87 (37%), Positives = 48/87 (55%)
 Frame = -1

Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84
           LM+   G+ +    I++V+N+F+   GLKIN +KT L T G+S+    ++        A 
Sbjct: 624 LMILTDGKVRSVDGIVEVMNLFAKRSGLKINMEKTTLYTAGVSDHNRHMMISRYPFGLAQ 683

Query: 83  LPITYLELPLTSTRLGIRDCQPLIENI 3
           LP+ YL LPL + RL   D  PL E I
Sbjct: 684 LPVRYLGLPLVTKRLTKEDLSPLFEQI 710



 Score = 29.6 bits (65), Expect(2) = 1e-10
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 316 HPKCRKTEIINLCFADD 266
           HPKC+   + +LCFADD
Sbjct: 607 HPKCKNLGLTHLCFADD 623


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 60.1 bits (144), Expect(2) = 1e-10
 Identities = 29/87 (33%), Positives = 50/87 (57%)
 Frame = -1

Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84
           L++F + +     +IM   N FS   GL+ + +K+ +  GG+  +E++ L+D I +   +
Sbjct: 695 LLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGS 754

Query: 83  LPITYLELPLTSTRLGIRDCQPLIENI 3
           LP  YL +PL S +L    C+PLI+ I
Sbjct: 755 LPFRYLGVPLASKKLNFSQCKPLIDKI 781



 Score = 30.4 bits (67), Expect(2) = 1e-10
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 340 CFNNTIRAHPKCRKTEIINLCFADDPLCFS 251
           C +     HPKC + ++ +L FADD L F+
Sbjct: 670 CKDPEFNFHPKCERIKLTHLMFADDLLMFA 699