BLASTX nr result
ID: Coptis25_contig00041164
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00041164 (362 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 67 1e-11 gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 67 1e-11 gb|ABD96948.1| hypothetical protein [Cleome spinosa] 64 2e-11 dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 61 1e-10 emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 1e-10 >gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490 [Arabidopsis thaliana] Length = 657 Score = 67.0 bits (162), Expect(2) = 1e-11 Identities = 30/87 (34%), Positives = 55/87 (63%) Frame = -1 Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84 +++F G + I+ +L++F G GL IN QKT L+ G + + +++++ ++GV Q + Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307 Query: 83 LPITYLELPLTSTRLGIRDCQPLIENI 3 LP+ YL +PL S ++ D QPL++ I Sbjct: 308 LPVRYLGVPLMSQKMKKHDYQPLVDRI 334 Score = 26.9 bits (58), Expect(2) = 1e-11 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 316 HPKCRKTEIINLCFADDPLCF 254 HPKC I +L FADD L F Sbjct: 231 HPKCLAPMITHLSFADDILVF 251 >gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 543 Score = 67.0 bits (162), Expect(2) = 1e-11 Identities = 30/87 (34%), Positives = 55/87 (63%) Frame = -1 Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84 +++F G + I+ +L++F G GL IN QKT L+ G + + +++++ ++GV Q + Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307 Query: 83 LPITYLELPLTSTRLGIRDCQPLIENI 3 LP+ YL +PL S ++ D QPL++ I Sbjct: 308 LPVRYLGVPLMSQKMKKHDYQPLVDRI 334 Score = 26.9 bits (58), Expect(2) = 1e-11 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 316 HPKCRKTEIINLCFADDPLCF 254 HPKC I +L FADD L F Sbjct: 231 HPKCLAPMITHLSFADDILVF 251 >gb|ABD96948.1| hypothetical protein [Cleome spinosa] Length = 539 Score = 63.9 bits (154), Expect(2) = 2e-11 Identities = 32/87 (36%), Positives = 50/87 (57%) Frame = -1 Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84 +M+F GET+ +E+ L+ FS GL +NT+KT + GL+ E+ L IG + Sbjct: 154 IMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLCAVIGFTRGY 213 Query: 83 LPITYLELPLTSTRLGIRDCQPLIENI 3 LP+ YL + L+ RL D QPL++ + Sbjct: 214 LPVRYLGVSLSPVRLTKSDYQPLLDRV 240 Score = 29.6 bits (65), Expect(2) = 2e-11 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 316 HPKCRKTEIINLCFADDPLCFSS 248 HPKC I +L FADD + F+S Sbjct: 137 HPKCHSPVITHLAFADDIMIFTS 159 >dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1115 Score = 61.2 bits (147), Expect(2) = 1e-10 Identities = 33/87 (37%), Positives = 48/87 (55%) Frame = -1 Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84 LM+ G+ + I++V+N+F+ GLKIN +KT L T G+S+ ++ A Sbjct: 624 LMILTDGKVRSVDGIVEVMNLFAKRSGLKINMEKTTLYTAGVSDHNRHMMISRYPFGLAQ 683 Query: 83 LPITYLELPLTSTRLGIRDCQPLIENI 3 LP+ YL LPL + RL D PL E I Sbjct: 684 LPVRYLGLPLVTKRLTKEDLSPLFEQI 710 Score = 29.6 bits (65), Expect(2) = 1e-10 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 316 HPKCRKTEIINLCFADD 266 HPKC+ + +LCFADD Sbjct: 607 HPKCKNLGLTHLCFADD 623 >emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1114 Score = 60.1 bits (144), Expect(2) = 1e-10 Identities = 29/87 (33%), Positives = 50/87 (57%) Frame = -1 Query: 263 LMLFFKGETQVTIEIMKVLNIFSDGIGLKINTQKTNLITGGLSEDESKLLSDTIGVQQAT 84 L++F + + +IM N FS GL+ + +K+ + GG+ +E++ L+D I + + Sbjct: 695 LLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGS 754 Query: 83 LPITYLELPLTSTRLGIRDCQPLIENI 3 LP YL +PL S +L C+PLI+ I Sbjct: 755 LPFRYLGVPLASKKLNFSQCKPLIDKI 781 Score = 30.4 bits (67), Expect(2) = 1e-10 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 340 CFNNTIRAHPKCRKTEIINLCFADDPLCFS 251 C + HPKC + ++ +L FADD L F+ Sbjct: 670 CKDPEFNFHPKCERIKLTHLMFADDLLMFA 699