BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041160
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-33
ref|XP_002511067.1| pentatricopeptide repeat-containing protein,...   137   7e-31
ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
emb|CBI20594.3| unnamed protein product [Vitis vinifera]              119   3e-25

>ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  144 bits (364), Expect = 6e-33
 Identities = 69/127 (54%), Positives = 93/127 (73%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R VFD++  L RD+V+WNSMISGY+Q   +  AL+VF ++L    + P++V+LVSAL+ C
Sbjct: 182 RAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVC 241

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
           GR+G  +LG+KIHG    SG V DVF+GSSL  MY+KCG  E+A +VF R+  RN VCW+
Sbjct: 242 GRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWT 301

Query: 363 SIIAGCA 383
           S+IAG A
Sbjct: 302 SMIAGYA 308



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 44/127 (34%), Positives = 74/127 (58%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R+VFD +    R+ V W SMI+GY Q +++ EA+ +F +M +  G   +  ++   L+AC
Sbjct: 286 RKVFDRIP--HRNTVCWTSMIAGYAQSDLFKEAIELFREM-QIGGFAADAATIACVLSAC 342

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
           G  G    GR IH +   +    D+   ++L  MY+KCG  ++AL++F  L Q ++  WS
Sbjct: 343 GHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWS 402

Query: 363 SIIAGCA 383
           ++I+G A
Sbjct: 403 AVISGLA 409



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
 Frame = +3

Query: 39  DIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTACGRIGDFELGRKI 218
           ++ +WN M   Y +     E + ++  ML RNG  P++ S    L AC R+     GR+I
Sbjct: 91  NVFSWNFMFRAYSRSSFPAETIALYNLML-RNGTLPDNYSFPFVLKACARLSLLHKGREI 149

Query: 219 HGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQ--RNVVCWSSIIAG 377
           H   +  G   DVF+ ++L + ++ CG  E A  VF  L    R+VV W+S+I+G
Sbjct: 150 HSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISG 204


>ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550182|gb|EEF51669.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 318

 Score =  137 bits (346), Expect = 7e-31
 Identities = 67/122 (54%), Positives = 90/122 (73%)
 Frame = +3

Query: 18  LVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTACGRIGD 197
           +V VL RD+V+WNSMISGY+Q E  G+AL+VFG++L  N VR ++V+LV+ALTACGR G 
Sbjct: 1   MVPVLIRDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGF 60

Query: 198 FELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWSSIIAG 377
             LG+KIH  +V +G V DV +GS L  MYAKC   + A +VF ++  RN+VCW+S+I G
Sbjct: 61  VNLGKKIHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVG 120

Query: 378 CA 383
            A
Sbjct: 121 YA 122



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 40/127 (31%), Positives = 75/127 (59%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R VFD + V  R++V W S+I GY +  ++ E L +F + L+  GV  +   +   ++AC
Sbjct: 100 REVFDKIPV--RNLVCWTSLIVGYARLNMYKEGLELFRE-LQIAGVIADAALVACVVSAC 156

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
           G +G    GR +H +   +G   ++ + ++L  MY+KCG  E+A Q+F  + ++++  W+
Sbjct: 157 GHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIEKAHQIFNGMVKKDLFSWT 216

Query: 363 SIIAGCA 383
           ++I+G A
Sbjct: 217 AMISGFA 223


>ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  121 bits (304), Expect = 5e-26
 Identities = 59/127 (46%), Positives = 87/127 (68%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R+VFD +    RD+V+WNSMI+GY +     EA+ VFG+M  R+G  P+++SLVS L AC
Sbjct: 171 RKVFDEIP--RRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGAC 228

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
           G +GD ELGR + GFVV  G   + ++GS+L +MYAKCG    A ++F  +  R+V+ W+
Sbjct: 229 GELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWN 288

Query: 363 SIIAGCA 383
           ++I+G A
Sbjct: 289 AVISGYA 295



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 49/127 (38%), Positives = 79/127 (62%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           RR+FD  G+  RD++TWN++ISGY Q  +  EA+ +F  M E + V  N ++L + L+AC
Sbjct: 273 RRIFD--GMAARDVITWNAVISGYAQNGMADEAISLFHAMKE-DCVTENKITLTAVLSAC 329

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
             IG  +LG++I  +    G   D+F+ ++L  MYAKCG    A +VF+ + Q+N   W+
Sbjct: 330 ATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWN 389

Query: 363 SIIAGCA 383
           ++I+  A
Sbjct: 390 AMISALA 396


>ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/127 (46%), Positives = 86/127 (67%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R+VFD +    RD V+WNSMI+GY +     EA+ VF +M  R+G  P+++SLVS L AC
Sbjct: 177 RKVFDEIP--HRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGAC 234

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
           G +GD ELGR + GFVV  G   + ++GS+L +MYAKCG  E A ++F  +  R+V+ W+
Sbjct: 235 GELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWN 294

Query: 363 SIIAGCA 383
           ++I+G A
Sbjct: 295 AVISGYA 301



 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 48/127 (37%), Positives = 79/127 (62%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           RR+FD  G+  RD++TWN++ISGY Q  +  EA+ +F  M E + V  N ++L + L+AC
Sbjct: 279 RRIFD--GMAARDVITWNAVISGYAQNGMADEAILLFHGMKE-DCVTANKITLTAVLSAC 335

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
             IG  +LG++I  +    G   D+F+ ++L  MYAK G  + A +VF+ + Q+N   W+
Sbjct: 336 ATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWN 395

Query: 363 SIIAGCA 383
           ++I+  A
Sbjct: 396 AMISALA 402


>emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  119 bits (297), Expect = 3e-25
 Identities = 58/127 (45%), Positives = 83/127 (65%)
 Frame = +3

Query: 3   RRVFDLVGVLDRDIVTWNSMISGYMQGEIWGEALRVFGDMLERNGVRPNDVSLVSALTAC 182
           R +FD + V DR++V WN+MI+GY Q E + +A+ VF  M +  GV PNDV+LVS L AC
Sbjct: 147 RHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPAC 206

Query: 183 GRIGDFELGRKIHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRLHQRNVVCWS 362
             +G  +LG+ I GF+        +F+G++L  MYAKCG   EA +VF ++ +R+V+ WS
Sbjct: 207 AHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWS 266

Query: 363 SIIAGCA 383
            II G A
Sbjct: 267 IIICGLA 273



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +3

Query: 39  DIVTWNSMISGYMQGEIWGEALRVFGDMLER-NGVRPNDVSLVSALTACGRIGDFELGRK 215
           +I   N+ +    Q   W  A++ F   +   N   P++ +  S L AC  +     G+K
Sbjct: 54  NIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQK 113

Query: 216 IHGFVVASGCVFDVFMGSSLFAMYAKCGHAEEALQVFRRL--HQRNVVCWSSIIAGCA 383
           IH  V   G   ++F+ +SL  MY K G+   A  +F  +    RNVVCW+++IAG A
Sbjct: 114 IHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYA 171