BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041133
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   2e-07
gb|ABN05905.1| reverse transcriptase, related [Medicago truncatula]    57   2e-06

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
 Frame = -1

Query: 291 IEECWSISYHGSPSFIFNSKLKLLHSSLRVWNKEVFGNIFTQIKESEALLTSL---LSDQ 121
           IE+CW++   GSP ++ +SKLK       VWNK+VFGNI  Q+ ++E  L+ +   ++  
Sbjct: 21  IEDCWNVRVLGSPLYVLSSKLK-------VWNKDVFGNILIQVTQAEKKLSDIQNHINTS 73

Query: 120 ANVTNLMSIKDTRDNIIDL-YQKENLYW 40
            +  NLM+ +      +DL  QK+  +W
Sbjct: 74  GHNDNLMNAEKIAQTNLDLALQKQETFW 101


>gb|ABN05905.1| reverse transcriptase, related [Medicago truncatula]
          Length = 328

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
 Frame = -1

Query: 291 IEECWSISYHGSPSFIFNSKLKLLHSSLRVWNKEVFGNIFTQIKESEALLTSLLSDQANV 112
           I++ WS+   G P F+ + KL+ L   L+ WNKEVFGNI   +K +EA   SL + QA +
Sbjct: 216 IQDSWSLPVIGCPMFVLSKKLQTLEIRLKCWNKEVFGNIHDLVKTTEA---SLQTVQAQI 272

Query: 111 TNLMSI-------KDTRDNIIDLYQKENLYW-KQISHSASVLDA 4
             L  I       K  + ++     KE L+W ++    A V DA
Sbjct: 273 QTLGRIELLVQEEKQAQHDLDLALNKEELFWLEKFKDHALVEDA 316