BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041080
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42
emb|CBI22375.3| unnamed protein product [Vitis vinifera]              174   7e-42
emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]   172   2e-41
ref|XP_002884468.1| pentatricopeptide repeat-containing protein ...   172   3e-41
ref|XP_003590960.1| Pentatricopeptide repeat-containing protein ...   170   1e-40

>ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  176 bits (447), Expect = 1e-42
 Identities = 85/111 (76%), Positives = 101/111 (90%)
 Frame = +3

Query: 3   NRIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITY 182
           NRIE AT+VL RM+ RG LPD+VTYNI+IGSLC+R KLGLA+KVLD LL DNC+PT+ITY
Sbjct: 151 NRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITY 210

Query: 183 TILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           TILIEATI++GGI EAMKLL+EML++GL PDMYTYNAIIRG+CKE MV++A
Sbjct: 211 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERA 261



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/109 (38%), Positives = 62/109 (56%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           I  A K+L  M  RG LPD+ TYN +I  +C  G +  A +++  L    C P +I+Y I
Sbjct: 223 INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNI 282

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           L+ A + QG   E  KL+ EM S+G  P+  TY+ +I  LC+   +D+A
Sbjct: 283 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEA 331



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 37/110 (33%), Positives = 65/110 (59%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           R++ A  ++  M + GCLPD+V YN ++ +LC  G    A+++ + L    C P + +Y 
Sbjct: 362 RLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYN 421

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
            +I A    G    A+ ++  M+SKG+ PD  TYN++I  LC++ +V++A
Sbjct: 422 TMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEA 471



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 40/109 (36%), Positives = 66/109 (60%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           +E A +++  + ++GC PDV++YNIL+ +  ++GK     K++  +    C P  +TY+I
Sbjct: 258 VERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 317

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           LI +    G I EA+ +L  M+ K L PD Y+Y+ +I  LCKE  +D A
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/106 (38%), Positives = 62/106 (58%)
 Frame = +3

Query: 24  KVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIEAT 203
           K++  M +RGC P+ VTY+ILI SLC  G++  A+ VL  ++E    P   +Y  LI A 
Sbjct: 298 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 357

Query: 204 IIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
             +G +  A+ ++D M+S G  PD+  YN I+  LCK    +QA +
Sbjct: 358 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/109 (32%), Positives = 60/109 (55%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           ++  A KVL ++    C+P V+TY ILI +    G +  AMK+L+ +L    LP + TY 
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQ 332
            +I     +G +  A +L+  + SKG +PD+ +YN ++R    +   D+
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDE 295



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 51/90 (56%)
 Frame = +3

Query: 39  MQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIEATIIQGG 218
           M ++G  PD +TYN LI  LC  G +  A+ +LD + +    PT+I+Y I++        
Sbjct: 443 MISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 502

Query: 219 IGEAMKLLDEMLSKGLRPDMYTYNAIIRGL 308
           I +A+ +  EM+ KG RP+  TY  +I G+
Sbjct: 503 IDDAIGMFAEMIEKGCRPNETTYILLIEGI 532


>emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  174 bits (441), Expect = 7e-42
 Identities = 84/110 (76%), Positives = 99/110 (90%)
 Frame = +3

Query: 3   NRIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITY 182
           NRIE AT+VL RM+ RG LPD+VTYNI+IGSLC+R KLGLA+KVLD LL DNC+PT+ITY
Sbjct: 151 NRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITY 210

Query: 183 TILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQ 332
           TILIEATI++GGI EAMKLL+EML++GL PDMYTYNAIIRG+CKE M D+
Sbjct: 211 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDE 260



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/109 (39%), Positives = 60/109 (55%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           I  A K+L  M  RG LPD+ TYN +I  +C  G      K++  +    C P  +TY+I
Sbjct: 223 INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSI 282

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           LI +    G I EA+ +L  M+ K L PD Y+Y+ +I  LCKE  +D A
Sbjct: 283 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 331



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/106 (38%), Positives = 62/106 (58%)
 Frame = +3

Query: 24  KVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIEAT 203
           K++  M +RGC P+ VTY+ILI SLC  G++  A+ VL  ++E    P   +Y  LI A 
Sbjct: 263 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 322

Query: 204 IIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
             +G +  A+ ++D M+S G  PD+  YN I+  LCK    +QA +
Sbjct: 323 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 368



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/110 (35%), Positives = 61/110 (55%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           ++  A KVL ++    C+P V+TY ILI +    G +  AMK+L+ +L    LP + TY 
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
            +I     +G   E  KL+ EM S+G  P+  TY+ +I  LC+   +D+A
Sbjct: 247 AIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEA 296



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/90 (31%), Positives = 52/90 (57%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           RI+ A  VL  M  +   PD  +Y+ LI +LC  G+L LA+ ++D+++ + CLP I+ Y 
Sbjct: 292 RIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 351

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPD 275
            ++ A    G   +A+++ +++   G  P+
Sbjct: 352 TILAALCKNGNANQALEIFNKLRGMGCPPN 381


>emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  172 bits (437), Expect = 2e-41
 Identities = 83/111 (74%), Positives = 100/111 (90%)
 Frame = +3

Query: 3   NRIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITY 182
           N+IE AT+VL RM+ RG LPD+VTYNI+IGSLC+R KLGLA+ VLD LL DNC+PT+ITY
Sbjct: 161 NQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITY 220

Query: 183 TILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           TILIEATI++GGI EAMKLL+EML++GL PDMYTYNAIIRG+CKE MV++A
Sbjct: 221 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERA 271



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 37/110 (33%), Positives = 65/110 (59%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           R++ A  ++  M + GCLPD+V YN ++ +LC  G    A+++ + L    C P + +Y 
Sbjct: 372 RLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYN 431

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
            +I A    G    A+ ++  M+SKG+ PD  TYN++I  LC++ +V++A
Sbjct: 432 TMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEA 481



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 42/109 (38%), Positives = 62/109 (56%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           I  A K+L  M  RG LPD+ TYN +I  +C  G +  A +++  L    C P +I+Y I
Sbjct: 233 INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNI 292

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           L+ A + QG   E  KL+ EM S+G  P+  TY+ +I  LC+   +D+A
Sbjct: 293 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEA 341



 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 40/109 (36%), Positives = 66/109 (60%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           +E A +++  + ++GC PDV++YNIL+ +  ++GK     K++  +    C P  +TY+I
Sbjct: 268 VERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 327

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           LI +    G I EA+ +L  M+ K L PD Y+Y+ +I  LCKE  +D A
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/106 (38%), Positives = 62/106 (58%)
 Frame = +3

Query: 24  KVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIEAT 203
           K++  M +RGC P+ VTY+ILI SLC  G++  A+ VL  ++E    P   +Y  LI A 
Sbjct: 308 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 367

Query: 204 IIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
             +G +  A+ ++D M+S G  PD+  YN I+  LCK    +QA +
Sbjct: 368 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/109 (31%), Positives = 58/109 (53%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           ++  A  VL ++    C+P V+TY ILI +    G +  AMK+L+ +L    LP + TY 
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 256

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQ 332
            +I     +G +  A +L+  + SKG  PD+ +YN ++R    +   D+
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDE 305



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 51/90 (56%)
 Frame = +3

Query: 39  MQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIEATIIQGG 218
           M ++G  PD +TYN LI  LC  G +  A+ +LD + +    PT+I+Y I++        
Sbjct: 453 MISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 512

Query: 219 IGEAMKLLDEMLSKGLRPDMYTYNAIIRGL 308
           I +A+ +  EM+ KG RP+  TY  +I G+
Sbjct: 513 IDDAIGMFAEMIEKGCRPNETTYILLIEGI 542


>ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330308|gb|EFH60727.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 598

 Score =  172 bits (436), Expect = 3e-41
 Identities = 81/113 (71%), Positives = 100/113 (88%)
 Frame = +3

Query: 3   NRIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITY 182
           NRI+ AT+VL RM+++   PD VTYNI+IGSLCSRGKL LA+KVLD LL DNC PT+ITY
Sbjct: 168 NRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITY 227

Query: 183 TILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
           TILIEAT+++GG+ EA+KLLDEMLS+GL+PDM+TYN IIRG+CKE MVD+AF+
Sbjct: 228 TILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 280



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/112 (37%), Positives = 69/112 (61%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           ++ A +++  ++ +GC PDV++YNIL+ +L ++GK     K++  +  + C P ++TY+I
Sbjct: 275 VDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSI 334

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFDF 344
           LI      G I EAM LL  M  KGL PD Y+Y+ +I   C+E  +D A +F
Sbjct: 335 LITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386



 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 43/112 (38%), Positives = 66/112 (58%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           R++ A + L  M + GCLPD+V YN ++ +LC  GK   A+++   L E  C P   +Y 
Sbjct: 379 RLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 438

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
            +  A    G    A+ ++ EM+S G+ PD  TYN++I  LC+E MVD+AF+
Sbjct: 439 TMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFE 490



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/111 (33%), Positives = 66/111 (59%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           ++ A K+L  M +RG  PD+ TYN +I  +C  G +  A +++ +L    C P +I+Y I
Sbjct: 240 VDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNI 299

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
           L+ A + QG   E  KL+ +M S+   P++ TY+ +I  LC++  +++A +
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMN 350



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 41/110 (37%), Positives = 62/110 (56%)
 Frame = +3

Query: 12  EFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTIL 191
           E   K++ +M +  C P+VVTY+ILI +LC  GK+  AM +L  + E    P   +Y  L
Sbjct: 311 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 370

Query: 192 IEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
           I A   +G +  A++ L+ M+S G  PD+  YN ++  LCK    DQA +
Sbjct: 371 IAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 420



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/104 (30%), Positives = 57/104 (54%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           +++ A KVL ++ +  C P V+TY ILI +    G +  A+K+LD +L     P + TY 
Sbjct: 204 KLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYN 263

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKE 317
            +I     +G +  A +++  +  KG  PD+ +YN ++R L  +
Sbjct: 264 TIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQ 307



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/97 (30%), Positives = 51/97 (52%)
 Frame = +3

Query: 18  ATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIE 197
           A  ++  M + G  PD +TYN +I  LC  G +  A ++L  +      P+++TY I++ 
Sbjct: 453 ALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLL 512

Query: 198 ATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGL 308
                  I +A+ +LD M+  G RP+  TY  +I G+
Sbjct: 513 GFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549


>ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480008|gb|AES61211.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  170 bits (431), Expect = 1e-40
 Identities = 79/114 (69%), Positives = 98/114 (85%)
 Frame = +3

Query: 3   NRIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITY 182
           +R++ A+KVL RM+ RG  PDVVTYNILIG+ C RG+L LA++V+D LL+DNC PT+ITY
Sbjct: 160 DRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITY 219

Query: 183 TILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFDF 344
           TILIEATI QGGI EAMKLLDEMLS+GLRPD YTYN ++ G+CKE M+D+AF+F
Sbjct: 220 TILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEF 273



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 44/112 (39%), Positives = 61/112 (54%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           ++ A + L R+   GC+  V TYNIL+  L + GK     K++  +L   C P  ITY+ 
Sbjct: 267 LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYST 326

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFDF 344
           LI A    G I EA  +L  M  K L PD Y+Y+ +I  LC+E  VD A +F
Sbjct: 327 LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEF 378



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 37/109 (33%), Positives = 62/109 (56%)
 Frame = +3

Query: 9   IEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTI 188
           I+ A K+L  M +RG  PD  TYN+++  +C  G L  A + L  + ++ C+  + TY I
Sbjct: 232 IDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNI 291

Query: 189 LIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQA 335
           L+   + +G      KL+ +ML KG  P+  TY+ +I  LC++  +D+A
Sbjct: 292 LLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEA 340



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 40/112 (35%), Positives = 64/112 (57%)
 Frame = +3

Query: 6   RIEFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYT 185
           +++ A + L  M + G LPD+++YN ++ SLC  G    A+ + + L E  C P   +Y 
Sbjct: 371 KVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYN 430

Query: 186 ILIEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
            L  A    G    A+ ++ EMLS G+ PD  TYN++I  LC++ +VDQA +
Sbjct: 431 TLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIE 482



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 40/110 (36%), Positives = 63/110 (57%)
 Frame = +3

Query: 12  EFATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTIL 191
           E+  K++  M  +GC P+ +TY+ LI +LC  GK+  A  VL  + E    P   +Y  L
Sbjct: 303 EYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPL 362

Query: 192 IEATIIQGGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGLCKERMVDQAFD 341
           I A   +G +  A++ LD+M+S G  PD+ +YN+I+  LCK    D+A +
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALN 412



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
 Frame = +3

Query: 18  ATKVLGRMQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLEDNCLPTIITYTILIE 197
           A  +  ++   GC P+  +YN L G+L S G    A+ ++  +L +   P  ITY  LI 
Sbjct: 410 ALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLIS 469

Query: 198 ATIIQGGIGEAMKLLDEML-SKGLRPDMYTYNAIIRGLCK-ERMVD 329
                G + +A++LL +M  S+  +P + +YN ++ GLCK +R++D
Sbjct: 470 CLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIID 515



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
 Frame = +3

Query: 39  MQNRGCLPDVVTYNILIGSLCSRGKLGLAMKVLDHLLE-DNCLPTIITY-TILIEATIIQ 212
           M + G  PD +TYN LI  LC  G +  A+++L  + E + C PT+I+Y T+L+    +Q
Sbjct: 452 MLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQ 511

Query: 213 GGIGEAMKLLDEMLSKGLRPDMYTYNAIIRGL 308
             I +A+++L  M+++G  P+  TY  +I+G+
Sbjct: 512 -RIIDAIEVLAAMVNEGCLPNETTYTLLIQGI 542