BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00041010
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   118   6e-25
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   115   3e-24
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   104   6e-21
gb|ABA97687.1| retrotransposon protein, putative, unclassified [...    92   3e-17
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa Japonica Group]         92   3e-17

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  118 bits (295), Expect = 6e-25
 Identities = 55/113 (48%), Positives = 80/113 (70%)
 Frame = -1

Query: 339 SFNANFLVLIPKDKNTNKLNRFRPICMSNFCYKIVTKVPVVRLGSVATKVISEEQSGFIS 160
           +FNAN L+LIPK +N + +++FRPI M+NF +KI++K+   RL  +   ++S+EQ GFI 
Sbjct: 171 NFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQ 230

Query: 159 QRNPHHNIALTSELVNELKIKRHGGSIGIKLDISQAFDTLHWDFLWRVLQQFG 1
            RN    + L SE +N L  K  GG++  K+DIS+AFDTL+W FL +VL+QFG
Sbjct: 231 GRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFG 283


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  115 bits (289), Expect = 3e-24
 Identities = 54/116 (46%), Positives = 81/116 (69%)
 Frame = -1

Query: 348 MPSSFNANFLVLIPKDKNTNKLNRFRPICMSNFCYKIVTKVPVVRLGSVATKVISEEQSG 169
           +P++FNAN ++LIPK  N + ++++R I + NF +KI+ KV   RL  +   +IS+EQ G
Sbjct: 229 LPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRG 288

Query: 168 FISQRNPHHNIALTSELVNELKIKRHGGSIGIKLDISQAFDTLHWDFLWRVLQQFG 1
           F+  RN    IALTSE +N L  K  GG++ +K+D+++AFDTL+WDFL  VL+ FG
Sbjct: 289 FVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFG 344


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  104 bits (260), Expect = 6e-21
 Identities = 48/116 (41%), Positives = 78/116 (67%)
 Frame = -1

Query: 348 MPSSFNANFLVLIPKDKNTNKLNRFRPICMSNFCYKIVTKVPVVRLGSVATKVISEEQSG 169
           +  + N+N +VLIPK      +  +RPI ++NF +KI++K+   RL  +  ++IS EQ G
Sbjct: 494 LAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRLADITMRIISVEQRG 553

Query: 168 FISQRNPHHNIALTSELVNELKIKRHGGSIGIKLDISQAFDTLHWDFLWRVLQQFG 1
           FI  R+    + L SE +N L+ +++GG++ +K+DI++AFDTL W+FL  VLQ+FG
Sbjct: 554 FIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFG 609


>gb|ABA97687.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1070

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 45/111 (40%), Positives = 69/111 (62%)
 Frame = -1

Query: 333 NANFLVLIPKDKNTNKLNRFRPICMSNFCYKIVTKVPVVRLGSVATKVISEEQSGFISQR 154
           N   + LIPK K+ N +  FRPIC+ N C+K++TKV  +R+  +  KVISE Q+ FI  R
Sbjct: 518 NYGVITLIPKVKDANTIKAFRPICLLNVCFKLLTKVITIRITKIVHKVISETQTAFIPGR 577

Query: 153 NPHHNIALTSELVNELKIKRHGGSIGIKLDISQAFDTLHWDFLWRVLQQFG 1
                + +  E+++ELK     G I +KLD  +A++ + W FL++VLQ+ G
Sbjct: 578 QILDGVVILHEVLHELKSSNQAGII-LKLDFEKAYNKVQWQFLFKVLQRKG 627


>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa Japonica Group]
          Length = 779

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/111 (42%), Positives = 68/111 (61%)
 Frame = -1

Query: 333 NANFLVLIPKDKNTNKLNRFRPICMSNFCYKIVTKVPVVRLGSVATKVISEEQSGFISQR 154
           N   + LIPK K  N +  FRPIC+ N C+K++TKV  +R+  VA KVI E Q+ F+  R
Sbjct: 211 NYGVITLIPKIKEANNIKAFRPICLLNVCFKLLTKVLTMRITHVANKVIGESQTAFLPGR 270

Query: 153 NPHHNIALTSELVNELKIKRHGGSIGIKLDISQAFDTLHWDFLWRVLQQFG 1
                + +  E+++ELK     G I +KLD  +A+D + WDFL+ VLQ+ G
Sbjct: 271 FILDGVVILHEVLHELKNSGQSGII-LKLDFEKAYDKVQWDFLFDVLQRKG 320