BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040982
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polypro...    72   4e-11
gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...    72   4e-11
emb|CAJ86032.1| H0105C05.3 [Oryza sativa Indica Group]                 59   4e-07
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni...    58   7e-07
gb|ABA98082.1| retrotransposon protein, putative, Ty3-gypsy subc...    58   9e-07

>dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 127

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/70 (48%), Positives = 47/70 (67%)
 Frame = -1

Query: 370 YNKLKAMKIGPVPILKKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSS 191
           YNK+K  K GP  +L+KIN+NAYVV LP   +IS + NV D++ YH +  + P  + R+S
Sbjct: 56  YNKVKPRKYGPFKVLRKINDNAYVVALPKSMNISNTFNVADIHEYHADGVLYPEENLRTS 115

Query: 190 PSKDGETDVG 161
            S+  ETDVG
Sbjct: 116 SSEVEETDVG 125


>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/70 (48%), Positives = 47/70 (67%)
 Frame = -1

Query: 370 YNKLKAMKIGPVPILKKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSS 191
           YNK+K  K GP  +L+KIN+NAYVV LP   +IS + NV D++ YH +  + P  + R+S
Sbjct: 209 YNKVKPRKYGPFKVLRKINDNAYVVALPKSMNISNTFNVADIHEYHADGVLYPEENLRTS 268

Query: 190 PSKDGETDVG 161
            S+  ETDVG
Sbjct: 269 SSEVEETDVG 278


>emb|CAJ86032.1| H0105C05.3 [Oryza sativa Indica Group]
          Length = 627

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/78 (41%), Positives = 46/78 (58%)
 Frame = -1

Query: 367 NKLKAMKIGPVPILKKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSP 188
           +KL     GP  +L KIN NAY +DLPA+F +S + NV DL  Y G ++    +DSR++ 
Sbjct: 154 SKLMPRADGPFKVLAKINENAYKIDLPADFEVSPTFNVADLKPYLGEED---ELDSRTTQ 210

Query: 187 SKDGETDVG*D*IQTEFS 134
            ++GE D   + I T  S
Sbjct: 211 MQEGEDDEDINTIDTSTS 228


>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1234

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = -1

Query: 367  NKLKAMKIGPVPILKKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSP 188
            +KL     GP  +L KIN NAY +DLPA+F +S + NV DL  Y G ++    ++SR++ 
Sbjct: 1103 SKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEED---ELESRTTQ 1159

Query: 187  SKDGETDVG*D*IQTEFS 134
             ++GE D   + I T  S
Sbjct: 1160 MQEGEDDEDINTIDTSMS 1177


>gb|ABA98082.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 817

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
 Frame = -1

Query: 367 NKLKAMKIGPVPILKKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSP 188
           +KL     GP  +L KIN NAY +DLPA+F +S + NV DL  Y G ++    ++SR++ 
Sbjct: 686 SKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEED---ELESRTTQ 742

Query: 187 SKDGETDVG*D*IQTEFS-YLQTD 119
            ++GE D   + I T  S ++Q D
Sbjct: 743 MQEGEDDEDINTIDTSTSPHIQHD 766