BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040967
         (645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   168   9e-40
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   160   2e-37
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   160   2e-37
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   159   6e-37
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   157   2e-36

>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  168 bits (425), Expect = 9e-40
 Identities = 85/209 (40%), Positives = 123/209 (58%)
 Frame = +2

Query: 2   SEIMMHNVREGRCKLHRKCTEPIITHLPFADDLIAFIYGDIEAAKCLKENIETFTKCSGS 181
           S+++     + R   H +C +  +THL FADDL+    G + + + + E  ETF KCSG 
Sbjct: 57  SKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGL 116

Query: 182 EVNVNKSKVFFAGVDQGSCDSIQQILSFSASELPVKYLGMPLITTRLYSADCLPLITKVS 361
            +++ KS V+FAG+   S   +     F+   LPV+YLG+PL+T +L S D LPLI  + 
Sbjct: 117 RISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIK 176

Query: 362 N*IQTWKGKFLSYVGRVQLIKSVLNSLSVYWFSCFIVPQSIIEDINKLCRNFLWNGPDCA 541
             I +W  +FLSY GR+ LI SVL S+  +W   F +P+  I +I+K+C  +LW+G D  
Sbjct: 177 KKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCSAYLWSGGDLN 236

Query: 542 TSHAYIS*ESVCFLYDEGGLGVRDLSRMN 628
           TS A I+   VC   DEGGLG+R L   N
Sbjct: 237 TSKAKIAWTDVCKPKDEGGLGLRSLKEAN 265


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  160 bits (405), Expect = 2e-37
 Identities = 80/203 (39%), Positives = 122/203 (60%)
 Frame = +2

Query: 29   EGRCKLHRKCTEPIITHLPFADDLIAFIYGDIEAAKCLKENIETFTKCSGSEVNVNKSKV 208
            E +   H +C    +THL FADD++ F  G  ++ +      E F   S  ++++ KS +
Sbjct: 831  EKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTI 890

Query: 209  FFAGVDQGSCDSIQQILSFSASELPVKYLGMPLITTRLYSADCLPLITKVSN*IQTWKGK 388
            F AG+   +  SI Q   F    LPVKYLG+PL+T R+  +D LPL+ K+   I +W  +
Sbjct: 891  FMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNR 950

Query: 389  FLSYVGRVQLIKSVLNSLSVYWFSCFIVPQSIIEDINKLCRNFLWNGPDCATSHAYIS*E 568
            FLS+ GR+QLIKSVL+S++ +W S F +P++ +++I K+   FLW+GPD  T  A I+  
Sbjct: 951  FLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWS 1010

Query: 569  SVCFLYDEGGLGVRDLSRMNHAA 637
             VC L +EGGLG++ L   N  +
Sbjct: 1011 EVCKLKEEGGLGLKPLKEANEVS 1033


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  160 bits (404), Expect = 2e-37
 Identities = 80/194 (41%), Positives = 118/194 (60%)
 Frame = +2

Query: 47   HRKCTEPIITHLPFADDLIAFIYGDIEAAKCLKENIETFTKCSGSEVNVNKSKVFFAGVD 226
            H KC    +THL FADDL+    G I + + + +  + F K SG  +++ KS V+ AG+ 
Sbjct: 690  HPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLS 749

Query: 227  QGSCDSIQQILSFSASELPVKYLGMPLITTRLYSADCLPLITKVSN*IQTWKGKFLSYVG 406
              + + +     FS+ +LPV+YLG+PLIT RL + DCLPL+ +V   I +W  +FLSY G
Sbjct: 750  ATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAG 809

Query: 407  RVQLIKSVLNSLSVYWFSCFIVPQSIIEDINKLCRNFLWNGPDCATSHAYIS*ESVCFLY 586
            R+ LI SVL S+  +W + F +P+  I ++ K+C  FLW+G +  ++ A IS   VC   
Sbjct: 810  RLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPK 869

Query: 587  DEGGLGVRDLSRMN 628
            DEGGLG+R L   N
Sbjct: 870  DEGGLGLRSLKEAN 883


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  159 bits (401), Expect = 6e-37
 Identities = 74/194 (38%), Positives = 119/194 (61%)
 Frame = +2

Query: 47  HRKCTEPIITHLPFADDLIAFIYGDIEAAKCLKENIETFTKCSGSEVNVNKSKVFFAGVD 226
           H KC    +THL FADD++    G + + + + E  ++F K SG ++++ K+ ++FAG+ 
Sbjct: 208 HPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGIS 267

Query: 227 QGSCDSIQQILSFSASELPVKYLGMPLITTRLYSADCLPLITKVSN*IQTWKGKFLSYVG 406
           +  C   +    F+   LPV+YL +PL+T R  S D  PL+ ++   I TW  +FLSY G
Sbjct: 268 KSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAG 327

Query: 407 RVQLIKSVLNSLSVYWFSCFIVPQSIIEDINKLCRNFLWNGPDCATSHAYIS*ESVCFLY 586
           R+ L+ SVL S+  +W S F +P+  + +I+KLC  FLW+GP+ +T+ A I+ E+VC   
Sbjct: 328 RLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPK 387

Query: 587 DEGGLGVRDLSRMN 628
            EGGLG++ +   N
Sbjct: 388 REGGLGLQSIKEAN 401


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  157 bits (396), Expect = 2e-36
 Identities = 78/200 (39%), Positives = 118/200 (59%)
 Frame = +2

Query: 29   EGRCKLHRKCTEPIITHLPFADDLIAFIYGDIEAAKCLKENIETFTKCSGSEVNVNKSKV 208
            E R   H +C    +THL FADD++ F  G   + + +    + F   SG  +++ KS +
Sbjct: 939  EKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTL 998

Query: 209  FFAGVDQGSCDSIQQILSFSASELPVKYLGMPLITTRLYSADCLPLITKVSN*IQTWKGK 388
            F A +   +C SI     F +  LPV+YLG+PL+T R+  ADCLPL+ K+ + I +WK +
Sbjct: 999  FMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNR 1058

Query: 389  FLSYVGRVQLIKSVLNSLSVYWFSCFIVPQSIIEDINKLCRNFLWNGPDCATSHAYIS*E 568
            FLSY GR+QL+ SV++SL+ +W S F +P++ I +I ++   FLW+G D     A ++  
Sbjct: 1059 FLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWH 1118

Query: 569  SVCFLYDEGGLGVRDLSRMN 628
             VC    EGGLG+R L   N
Sbjct: 1119 DVCKPKSEGGLGLRSLVDAN 1138