BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040930
         (750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    86   6e-15
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...    72   9e-11
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    70   4e-10
gb|ADN34130.1| ubiquitin-protein ligase [Cucumis melo subsp. melo]     69   1e-09
ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    68   2e-09

>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 9/250 (3%)
 Frame = +3

Query: 27  GSNHG*VIMIGKNSPSMFLLNPLTEAKIFLPPATEISWLVDYQPSRIDAEYAVELFEYLG 206
           GS+HG  +MI  ++P++ L+NPLT AK+ LPP +    ++ +  S I  EYA      L 
Sbjct: 94  GSSHG-WLMILDDTPTILLINPLTRAKLSLPPLSSFPNVISFNYSDIGREYA------LR 146

Query: 207 GVVHDYMFIPSRQVTWNLKLRAELSSHPTLSSMEGDRCVVLLLSGLVRQFAFCTPGDNKW 386
            ++ + + +  RQ+  +   +  LSS P    ++ +  VV+ +       A+C  GD  W
Sbjct: 147 NLLGERVTVSLRQMRDSFIRKVVLSSSP----LKDNNFVVIAILNQTDDLAYCRNGDKSW 202

Query: 387 TTIVDNKETPNRSMITVCRDIRYRDGQFYVADRSSRVVVCDVGPPYPGTKQFATMNSYHQ 566
            ++V+N         + C D+ + +G FY  +++ ++V+CD+    P   + + M +  Q
Sbjct: 203 -SLVENAR-------SFCEDVIFVNGMFYAVNKAGQIVICDISSDSP---RVSFMETPRQ 251

Query: 567 LYTEYARLVELSGEXXXXXXXXXXXXYKNSEYPM---------GFSIFKLGQDSKEWMEV 719
              +   LV  SG+            Y+     M          F +F+L  +  +W+ +
Sbjct: 252 AGGDMQYLVN-SGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRM 310

Query: 720 KNIGDATLFV 749
             +GD  LF+
Sbjct: 311 STLGDKALFI 320


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
           gi|223551309|gb|EEF52795.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 406

 Score = 72.4 bits (176), Expect = 9e-11
 Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 13/261 (4%)
 Frame = +3

Query: 6   PHTHE--CIGSNHG*VIMIGKNSPSMFLLNPLTEAKIFLPPATEISWLVDYQPSRIDAEY 179
           P T E  C GS+HG ++M+ +++PS+FLLNPLT+A+I LP  +       Y P+ +  E 
Sbjct: 81  PETIEKRCCGSSHGWLVMV-EDTPSIFLLNPLTKARIELPSLSTF----PYFPTEVVYEN 135

Query: 180 AVELFEYLGGVVHDYMFIPSRQVTWNLKLRAELSSHPTLSSMEGDRCVVLLLSGL--VRQ 353
           +  + EY              ++      +A +S  P+     G+  V+ +   +     
Sbjct: 136 SRNINEYFNTKA-------KLRIRETYIRKAIVSEDPS----TGNFAVMAIYKTINSTEN 184

Query: 354 FAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYRDGQFYVADRSSRVVVC--DVGPP-- 521
            AFC  GD  W TI +  +  +       +D+ +  G+FY  D   RV +C  D+ PP  
Sbjct: 185 IAFCKSGDATWFTIQETSQKIH------YQDVMFHRGKFYAVDDKGRVSICITDINPPSV 238

Query: 522 --YPGTKQFATMNSYHQLYTEYARLVELSGEXXXXXXXXXXXXYKNSEYPM---GFSIFK 686
                      +  Y Q Y        L+              Y+ S Y      F ++K
Sbjct: 239 IQVADPPPVPPLMGYKQWY--------LASLDEDLILAGRFRKYRGSGYEYQTHKFMVYK 290

Query: 687 LGQDSKEWMEVKNIGDATLFV 749
           L   S  W+E+  +GD   F+
Sbjct: 291 LDASSSNWLELDGLGDMLSFL 311


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 6/253 (2%)
 Frame = +3

Query: 9   HTHECIGSNHG*VIMIGKNSPSMFLLNPLTEAKIFLPPATEISWLVDYQPSRIDAEYAVE 188
           H  +  GS+HG +I++  +SPS+ ++NPLT  KI LP  +    +V +  + +  EY   
Sbjct: 87  HRKKHCGSSHGWLIILD-DSPSILVINPLTRRKIHLPAISSFPNVVSFDYANVGREY--- 142

Query: 189 LFEYLGGVVHDYMFIPSRQVTWNLKLRAELSSHPTLSSMEGDRCVVLLLSGLVRQFAFCT 368
               L     +      RQ+      +  +SS P     +GD  V + +       A+C 
Sbjct: 143 ---LLVNPQGERNTASLRQMRDGFIKKVVMSSSPL--EKKGDFFVAMAILCSTGDLAYCK 197

Query: 369 PGDNKWTTIVDNKETPNRSMITVCRDIRYRDGQFYVADRSSRVVVCDVGPPYPGTKQFAT 548
            GD  W  IV+N         +   D+ Y +G FY  +++ ++VVCDV    P   + + 
Sbjct: 198 NGDECW-NIVENSR-------SFSEDVIYFNGLFYAVNKAGQIVVCDVNGNSP---KVSF 246

Query: 549 MNSYHQLYTEYARLVE------LSGEXXXXXXXXXXXXYKNSEYPMGFSIFKLGQDSKEW 710
           + +  Q+  +   LV       L               YK +     F +FKL  +   W
Sbjct: 247 IETPRQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIFIYKTAR----FEVFKLDLNGPRW 302

Query: 711 MEVKNIGDATLFV 749
             V ++GD  LF+
Sbjct: 303 ERVTSLGDMMLFI 315


>gb|ADN34130.1| ubiquitin-protein ligase [Cucumis melo subsp. melo]
          Length = 392

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 7/248 (2%)
 Frame = +3

Query: 27  GSNHG*VIMIGKNSPSMFLLNPLTEAKIFLPPATEISWLVDYQPSRIDAEYAVELFEYLG 206
           GS+HG + ++ + +PS+ LLNPLT AK  LPP +    +V +  SR+  EY +       
Sbjct: 89  GSSHGWLTILDE-TPSILLLNPLTRAKFRLPPLSTFPNVVSFDYSRVGREYLIRT----- 142

Query: 207 GVVHDYMFIPSRQVTWNLKLRAELSSHPTLSSMEGDRCVVLLLSGLVRQFAFCTPGDNKW 386
              H Y     RQ+  +   +  LSS P   S + D   V +L+      AFC  G   W
Sbjct: 143 PTGHIYT-RNLRQMRDSFVKKIVLSSSP---SNQNDFLAVAILNH-SGDLAFCRSGGGSW 197

Query: 387 TTIVDNKETPNRSMITVCRDIRYRDGQFYVADRSSRVVVCDVGPPYPGTKQFATMNSYHQ 566
           T + D            C D+ Y DG FY  D+   V + D+        Q + + +  Q
Sbjct: 198 TFVDDAPSD--------CEDVIYTDGVFYAVDKYGVVSLMDL---RGSRSQVSLVATERQ 246

Query: 567 LYTEYARLVELSGEXXXXXXXXXXXXYKNSE-------YPMGFSIFKLGQDSKEWMEVKN 725
           L  +   LV L  E                +         + F +F++  +   W +V+N
Sbjct: 247 LAGDIQYLVRLGQELLLVSRYLDIVNDGMDDELISVMYRTVRFEVFRMEWEGPRWEKVEN 306

Query: 726 IGDATLFV 749
           + +  LFV
Sbjct: 307 LNEMALFV 314


>ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
           gi|449485151|ref|XP_004157083.1| PREDICTED: F-box
           protein SKIP23-like [Cucumis sativus]
          Length = 392

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 7/248 (2%)
 Frame = +3

Query: 27  GSNHG*VIMIGKNSPSMFLLNPLTEAKIFLPPATEISWLVDYQPSRIDAEYAVELFEYLG 206
           GS+HG + ++ + +P + LLNP T AK++LPP +    +V +  SR+  EY +       
Sbjct: 89  GSSHGWLTIVDE-TPPILLLNPFTRAKLWLPPLSTFPNVVSFDYSRVGREYLIRT----- 142

Query: 207 GVVHDYMFIPSRQVTWNLKLRAELSSHPTLSSMEGDRCVVLLLSGLVRQFAFCTPGDNKW 386
              H Y     RQ+  +   +  LSS P   S   D   V +L+      AFC  G   W
Sbjct: 143 PTGHIYT-RNLRQMRDSFVKKIVLSSSP---SNPNDFLAVAILNH-SGDLAFCRSGGGSW 197

Query: 387 TTIVDNKETPNRSMITVCRDIRYRDGQFYVADRSSRVVVCDVGPPYPGTKQFATMNSYHQ 566
           T + D            C D+ Y DG FY  D+   V + D+        Q + + +  Q
Sbjct: 198 TFVDDAPSD--------CEDVIYSDGVFYAVDKYGVVSLMDL---RGSRSQVSLVATERQ 246

Query: 567 LYTEYARLVELSGE--XXXXXXXXXXXXYKNSEYP-----MGFSIFKLGQDSKEWMEVKN 725
           L  +   LV+L  E               ++   P     + F +F++  +   W +V+N
Sbjct: 247 LAGDIQYLVKLGQELLLVSRYLDIVNDGMEDELIPVMYRTVRFEVFRMEWEGPRWEKVEN 306

Query: 726 IGDATLFV 749
           + +  LFV
Sbjct: 307 LNEMALFV 314