BLASTX nr result
ID: Coptis25_contig00040859
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00040859
(336 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi... 144 6e-33
ref|XP_002523226.1| pentatricopeptide repeat-containing protein,... 122 4e-26
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar... 104 8e-21
gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|A... 104 8e-21
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ... 103 2e-20
>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 144 bits (364), Expect = 6e-33
Identities = 71/111 (63%), Positives = 86/111 (77%)
Frame = +1
Query: 4 LFLQMCGSVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYV 183
LFLQM PDV+TLPLVLRACA++G V G+SVHGLCV+ G EK+LFVASAL+F YV
Sbjct: 97 LFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYV 156
Query: 184 TTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
T G++ +A+ +FD M ERD VLW AM AGYAQH EP+L+L V+R MV GV
Sbjct: 157 TFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGV 207
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/111 (29%), Positives = 55/111 (49%)
Frame = +1
Query: 4 LFLQMCGSVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYV 183
+F QM + D + +L AC G + G SVHG + L + +AL++FYV
Sbjct: 198 VFRQMVSAGVALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYV 257
Query: 184 TTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
+ + +FD M ERD + W+++ GY G ++L+++ M GV
Sbjct: 258 KCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGV 308
>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 488
Score = 122 bits (305), Expect = 4e-26
Identities = 58/97 (59%), Positives = 74/97 (76%)
Frame = +1
Query: 34 KPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYVTTGRIYEAKR 213
+PD ++LPLVLRACA +G+ G SVHGLCVK G +LFV SAL+F YVT G + A+
Sbjct: 134 QPDDFSLPLVLRACAGSGLGKLGSSVHGLCVKMGLAVSLFVGSALVFMYVTFGNVSNARV 193
Query: 214 VFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMV 324
VFD MA+RD+VLW A+ +GYAQ+GEP L L+V+R MV
Sbjct: 194 VFDEMAKRDSVLWTALLSGYAQNGEPKLGLQVFREMV 230
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/101 (30%), Positives = 49/101 (48%)
Frame = +1
Query: 34 KPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYVTTGRIYEAKR 213
K D + +L C G + G SVHG CV+ L + +A++ Y+ G + A R
Sbjct: 237 KLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLELSLGNAIVHMYIKCGMLAYAHR 296
Query: 214 VFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
FD M ERD W+++ GY G ++L ++ M G+
Sbjct: 297 FFDKMPERDVFSWSSLILGYGLSGNVSVALCLFDQMHMRGI 337
>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 104 bits (259), Expect = 8e-21
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +1
Query: 4 LFLQMCG-SVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFY 180
LFL+M S +PD +TLPL+LRAC+++ G +H LC+K GF +LFV+SAL+ Y
Sbjct: 120 LFLRMWRESCVRPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMY 179
Query: 181 VTTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEG 333
V G++ A+++FD M RD+VL+ AMF GY Q GE +L L ++R M G
Sbjct: 180 VDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSG 230
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/111 (28%), Positives = 56/111 (50%)
Frame = +1
Query: 4 LFLQMCGSVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYV 183
+F +M S D + +L AC G + G SVHG C++ L + +A+ YV
Sbjct: 222 MFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYV 281
Query: 184 TTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
+ A VF M+ RD + W+++ GY G+ ++S +++ M+ EG+
Sbjct: 282 KCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGI 332
>gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|AAV59277.1|
At4g14170 [Arabidopsis thaliana]
Length = 458
Score = 104 bits (259), Expect = 8e-21
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +1
Query: 4 LFLQMCG-SVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFY 180
LFL+M S +PD +TLPL+LRAC+++ G +H LC+K GF +LFV+SAL+ Y
Sbjct: 101 LFLRMWRESCVRPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMY 160
Query: 181 VTTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEG 333
V G++ A+++FD M RD+VL+ AMF GY Q GE +L L ++R M G
Sbjct: 161 VDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSG 211
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/111 (28%), Positives = 56/111 (50%)
Frame = +1
Query: 4 LFLQMCGSVSKPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYV 183
+F +M S D + +L AC G + G SVHG C++ L + +A+ YV
Sbjct: 203 MFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYV 262
Query: 184 TTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
+ A VF M+ RD + W+++ GY G+ ++S +++ M+ EG+
Sbjct: 263 KCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGI 313
>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297314142|gb|EFH44565.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 458
Score = 103 bits (256), Expect = 2e-20
Identities = 54/111 (48%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Frame = +1
Query: 4 LFLQMCGSVS-KPDVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFY 180
+FL+M + +PD +TLPLVLRAC+++ G +H LC+K GF +LFV SAL+ Y
Sbjct: 101 MFLRMWRESNVRPDDFTLPLVLRACSASREAKFGDLIHVLCLKLGFNASLFVRSALVIMY 160
Query: 181 VTTGRIYEAKRVFDGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEG 333
V G I A+++FD M RD+VL+ AMF GY Q GE LL L V+R M G
Sbjct: 161 VDLGEILHARKLFDDMPVRDSVLYTAMFGGYVQQGEALLGLAVFREMRYSG 211
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/99 (29%), Positives = 51/99 (51%)
Frame = +1
Query: 40 DVYTLPLVLRACASTGMVYRGMSVHGLCVKWGFEKNLFVASALIFFYVTTGRIYEAKRVF 219
D + +L AC G + G SVHG C++ L + +A+ YV + A VF
Sbjct: 215 DSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCFGLNLGNAITDMYVKCSILDYAHTVF 274
Query: 220 DGMAERDTVLWAAMFAGYAQHGEPLLSLEVYRNMVCEGV 336
M RD + W+++ GY G+ ++S++++ M+ EG+
Sbjct: 275 VNMPRRDVISWSSLILGYGLDGDVVVSIKLFDEMLQEGI 313