BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040838
         (541 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...   248   6e-64
emb|CBI26127.3| unnamed protein product [Vitis vinifera]              248   6e-64
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...   235   3e-60
ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|2...   226   2e-57
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi...   223   1e-56

>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  248 bits (632), Expect = 6e-64
 Identities = 118/182 (64%), Positives = 149/182 (81%), Gaps = 2/182 (1%)
 Frame = +2

Query: 2   SWNAMLFGFGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIERGQELFKSM 181
           SWNAMLFG G+HG A +AL++Y++MV SG+KPD+VTFIGLLM CSHSG IE+GQ LF+SM
Sbjct: 403 SWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESM 462

Query: 182 VLVHELTPEADHVACMVDLLGRGGHLRQASELIEEYSKT-ITITSL-EALLGACAAHGDV 355
           V V+ L+ E +HV CMVDLLGRGG+L QA EL++EYS+T    TSL EALLGAC AH +V
Sbjct: 463 VSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEV 522

Query: 356 RLGAKVGENLILMQPEKEVGYMMLSNMYCESGKWKEAEKIRKAMREQGVKKKPGCSWVEV 535
           R+GA +GE L + +P+KE+ Y++LSN+YC SG+WKEAE +RK M + GVKK PGCSW+EV
Sbjct: 523 RMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEV 582

Query: 536 GN 541
            N
Sbjct: 583 RN 584


>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  248 bits (632), Expect = 6e-64
 Identities = 118/182 (64%), Positives = 149/182 (81%), Gaps = 2/182 (1%)
 Frame = +2

Query: 2   SWNAMLFGFGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIERGQELFKSM 181
           SWNAMLFG G+HG A +AL++Y++MV SG+KPD+VTFIGLLM CSHSG IE+GQ LF+SM
Sbjct: 383 SWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESM 442

Query: 182 VLVHELTPEADHVACMVDLLGRGGHLRQASELIEEYSKT-ITITSL-EALLGACAAHGDV 355
           V V+ L+ E +HV CMVDLLGRGG+L QA EL++EYS+T    TSL EALLGAC AH +V
Sbjct: 443 VSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEV 502

Query: 356 RLGAKVGENLILMQPEKEVGYMMLSNMYCESGKWKEAEKIRKAMREQGVKKKPGCSWVEV 535
           R+GA +GE L + +P+KE+ Y++LSN+YC SG+WKEAE +RK M + GVKK PGCSW+EV
Sbjct: 503 RMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEV 562

Query: 536 GN 541
            N
Sbjct: 563 RN 564


>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  235 bits (600), Expect = 3e-60
 Identities = 109/182 (59%), Positives = 145/182 (79%), Gaps = 2/182 (1%)
 Frame = +2

Query: 2   SWNAMLFGFGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIERGQELFKSM 181
           S+NA+LF FGLHG A +AL++Y+DM+T G KPD++TFIGLLM CSHSG IE G+  F SM
Sbjct: 403 SFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMTCSHSGLIEEGRLFFNSM 462

Query: 182 VLVHELTPEADHVACMVDLLGRGGHLRQASELIEEYSKT--ITITSLEALLGACAAHGDV 355
             VH L+ EADHVACMVD+LGRGG+L +A EL+++YSKT  +  +S EALLGAC+AHG+V
Sbjct: 463 KSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSKTSDVEASSCEALLGACSAHGEV 522

Query: 356 RLGAKVGENLILMQPEKEVGYMMLSNMYCESGKWKEAEKIRKAMREQGVKKKPGCSWVEV 535
            +G  +G+ L  ++P KE+ Y++ SN+YC  G+WKEAE +RKAM ++G+KK PGCSW+EV
Sbjct: 523 EMGTYLGKTLKTLEPNKEISYVLQSNLYCVRGQWKEAEMVRKAMVDEGLKKMPGCSWIEV 582

Query: 536 GN 541
            N
Sbjct: 583 RN 584


>ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|222863515|gb|EEF00646.1|
           predicted protein [Populus trichocarpa]
          Length = 492

 Score =  226 bits (576), Expect = 2e-57
 Identities = 108/183 (59%), Positives = 140/183 (76%), Gaps = 3/183 (1%)
 Frame = +2

Query: 2   SWNAMLFGFGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIERGQELFKSM 181
           S+N+MLF FGLHG   +AL++Y+DMV SG+KPD+VTFIGL + CSHSG I++G E F+SM
Sbjct: 272 SFNSMLFAFGLHGKGTQALQLYEDMVASGIKPDKVTFIGLFLTCSHSGLIDKGLEFFESM 331

Query: 182 VLVHELTPEADHVACMVDLLGRGGHLRQASELIEEYSKT--ITITSLEALLGACAAHGDV 355
            LVH L+   DHVACMVD+LGRGG+L +A EL  ++SKT  +  +S E LLGAC+ HG+V
Sbjct: 332 RLVHGLSFNMDHVACMVDMLGRGGYLAEAKELAIKHSKTGDVKTSSCEPLLGACSTHGEV 391

Query: 356 RLGAKVGENLILMQPEKEVGYMML-SNMYCESGKWKEAEKIRKAMREQGVKKKPGCSWVE 532
             G  VGE L  ++P KE  Y +L SN+YC SG+WKEAE +RK M ++G+KK PGCSW+E
Sbjct: 392 ETGTNVGETLKDLEPHKETSYYVLRSNLYCASGRWKEAEMVRKEMVDEGLKKIPGCSWIE 451

Query: 533 VGN 541
           VGN
Sbjct: 452 VGN 454


>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  223 bits (569), Expect = 1e-56
 Identities = 112/182 (61%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
 Frame = +2

Query: 2   SWNAMLFGFGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIERGQELFKSM 181
           SWN+MLF FGLHG A +A+ +Y +MV SG+KPD VTF GLLM CSH G I  G   F+SM
Sbjct: 405 SWNSMLFAFGLHGRANEAICLYREMVASGVKPDEVTFTGLLMTCSHLGLISEGFAFFQSM 464

Query: 182 VLVHELTPEADHVACMVDLLGRGGHLRQASELIEEYSKT-ITIT-SLEALLGACAAHGDV 355
            L   L+   DHVACMVD+LGRGG++ +A  L E+YSKT IT T S E LLGAC AHGD+
Sbjct: 465 CLEFGLSHGMDHVACMVDMLGRGGYVAEARSLAEKYSKTSITRTNSCEVLLGACYAHGDL 524

Query: 356 RLGAKVGENLILMQPEKEVGYMMLSNMYCESGKWKEAEKIRKAMREQGVKKKPGCSWVEV 535
             G+ VGE L  ++PEKEVGY++LSN+YC SGKW+EAE +RKAM +QGVKK PG SW+E+
Sbjct: 525 GTGSSVGEYLKNLEPEKEVGYVLLSNLYCASGKWREAEMVRKAMLDQGVKKVPGSSWIEI 584

Query: 536 GN 541
            N
Sbjct: 585 RN 586