BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040818
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308993.1| predicted protein [Populus trichocarpa] gi|2...    62   6e-08
ref|XP_003623407.1| F-box/kelch-repeat protein [Medicago truncat...    61   1e-07
ref|XP_002442909.1| hypothetical protein SORBIDRAFT_08g004750 [S...    57   1e-06
ref|XP_002331536.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
gb|AAF69539.1|AC008007_14 F12M16.26 [Arabidopsis thaliana]             56   3e-06

>ref|XP_002308993.1| predicted protein [Populus trichocarpa] gi|222854969|gb|EEE92516.1|
           predicted protein [Populus trichocarpa]
          Length = 408

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
 Frame = +2

Query: 32  SSDQMENPKEKVKKSFEISGILSKLPNPIFIEILLRLPIKSLCRCLFLSKAWYHTIKHPS 211
           S  Q+   K K KKS  +  ++    N +  +ILLR+P KS+ +   +SK W   I HPS
Sbjct: 7   SCSQVSLNKPKQKKSSSVDAVIGN--NDLVTQILLRVPAKSVLKFKLVSKKWLSIISHPS 64

Query: 212 FIEKYHDNKVINNNNTPP-----CFLIQDGRDFRL--IDNESLDTFEAPIFSYPAKSPKR 370
           F   +H  + +N + T        FL ++   +R   +D +S+    +    +   +P+ 
Sbjct: 65  F--AFHHTQ-LNLHTTSALLLRVLFLFKEPFIYRFLSLDGKSVVNVPSNFLCFDPDNPRS 121

Query: 371 LFDIYSCNGLVFSTRRGFIY---DKEPYIICNPITGDHIVVPKPP 496
            +   SCNGL    R  F Y   ++  Y+  NP T     +P PP
Sbjct: 122 TYISQSCNGLHLCYRGIFCYIERNRSTYVF-NPTTRQFAAIPSPP 165


>ref|XP_003623407.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355498422|gb|AES79625.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 373

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
 Frame = +2

Query: 116 IFIEILLRLPIKSLCRCLFLSKAWYHTIKHPSFIEKYHDNKVINNNNTPPCFLIQD-GRD 292
           I IEI LRLP+KSL R   LSK++   I +P+F+ KYH  +  +  NT   F   D  R 
Sbjct: 11  IAIEIFLRLPLKSLLRFQCLSKSFESLISNPTFV-KYHVQR--SQKNTNLLFKFHDYYRS 67

Query: 293 FRLIDNESLDTFEAPIFSYPAKSPKRLFDIYSCNGLVFSTRRGFIYDKEPYIIC--NPIT 466
           F +++++SL T     F + ++   +   + SCNGLV      F   +  Y++C  NP T
Sbjct: 68  FSMVNDKSLSTI-VEDFDFGSRLKSKYKVVGSCNGLVCLIAEDFFKHRAKYLVCLWNPST 126


>ref|XP_002442909.1| hypothetical protein SORBIDRAFT_08g004750 [Sorghum bicolor]
           gi|241943602|gb|EES16747.1| hypothetical protein
           SORBIDRAFT_08g004750 [Sorghum bicolor]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
 Frame = +2

Query: 104 LPNPIFIEILLRLPIKSLCRCLFLSKAWYHTIKHPSFIEKYHDNKVINNNNTPPCFLIQD 283
           LP+ + +EIL RLP KSLCR   +S+AW   I  P+   ++     ++    P  +  + 
Sbjct: 16  LPDELIVEILARLPAKSLCRFKCVSRAWRSLISDPANRRRF--AHTLSGLFFPRPYGSRP 73

Query: 284 GRDFRLIDNESLD-----TFEAPIFSYPAKSPKRLFDIYSCNGLVFSTRRGFIYDKEP-- 442
             DF  +   S+         A  F  P      L D  SCNGL+     G I++     
Sbjct: 74  AWDFIGLSMSSVSPPPPGVDTALSFLPPTCGEMELLD--SCNGLLLLCCTGNIHESPSPP 131

Query: 443 --YIICNPITGDHIVVPKP 493
             Y++CNP TG+ + +P+P
Sbjct: 132 PFYVVCNPATGEWVTLPQP 150


>ref|XP_002331536.1| predicted protein [Populus trichocarpa] gi|222873760|gb|EEF10891.1|
           predicted protein [Populus trichocarpa]
          Length = 435

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
 Frame = +2

Query: 56  KEKVKKSFEISGILSKLPNPIFIEILLRLPIKSLCRCLFLSKAWYHTIKHPSF----IEK 223
           + K +++    G + KL     I IL RL  K++  C  + K+W   I  P F     E+
Sbjct: 16  RSKKRRNISRPGGIGKLSKNDLINILSRLTAKTILTCCSVCKSWRTLISDPEFANRHFER 75

Query: 224 YHDNKVINNNNTPPCFLIQDGRDFRLIDNESLDTFEAPIFSYPAKSP---KRLFDIYSCN 394
            HD + +      P  L    R   LID + L  +    FS P         +  + SCN
Sbjct: 76  DHDQEEVVLRPDGPGSL---SRTLILIDLDRLKPYAQ--FSLPLNDQLPFSGIEVVNSCN 130

Query: 395 GLVFSTRRGFIYDKEPYIICNPITGDHIVVP 487
           GL++ +      DK P ++CNPIT ++I +P
Sbjct: 131 GLLYLSS---YLDKNPVLVCNPITREYINIP 158


>gb|AAF69539.1|AC008007_14 F12M16.26 [Arabidopsis thaliana]
          Length = 340

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
 Frame = +2

Query: 32  SSDQMENPKEKVKKSFEISGILSKLPNPIFIEILLRLPIKSLCRCLFLSKAWYHTIKHPS 211
           S D++  P   + +++     +  +P  + I+IL R P KS+ R   +SK W   ++ P 
Sbjct: 9   SKDRLITPSSNLVRNY-----IDSIPVDLLIDILSRFPPKSIARFYCVSKLWESILRGPD 63

Query: 212 FIEKYHDNKVINNN-------NTPPCFLIQDGRDFRLID-NESLDTFEAPIFSYPAKSPK 367
           F E Y    V           NT    L+      ++ D N SL     P   +P K P 
Sbjct: 64  FTELYLTKSVALRRLFFALKVNTE--LLVFSSPQPQIPDENSSLVVEATPYKCFPKKIPT 121

Query: 368 RLFDIYSCNGLVFSTRRGFIYDKEPYIICNPITGDHIVVPK 490
            +    +  GLVF    G    ++P +I NP+TG+ I +PK
Sbjct: 122 EI--CTALGGLVF---LGTFLSRQPLVIVNPLTGEFITLPK 157