BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040785
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi...   183   1e-44
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]   183   1e-44
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi...   180   1e-43
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...   177   8e-43
gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]        167   8e-40

>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  183 bits (465), Expect = 1e-44
 Identities = 90/144 (62%), Positives = 112/144 (77%)
 Frame = +3

Query: 3   MIGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIA 182
           M+ EA K F+ M+ KDVVSWNA+VT YSQ G F +A+ L E++ +++I LNVVTWSAVIA
Sbjct: 281 MMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIA 340

Query: 183 GYTQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINR 362
           GY QRGLG EALDVFR+M+L GS PN VTLVSLLS CA  G  L GKETH + I+ ++N 
Sbjct: 341 GYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNL 400

Query: 363 EYGDCGEDLMVKNALIDMYAKCRN 434
           +  D G+DLMV NALIDMY+KC++
Sbjct: 401 DENDPGDDLMVINALIDMYSKCKS 424



 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/123 (38%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N LV++Y + G++  A ++ +EM ++ +  ++V+W++++A Y Q G  + A+ +F +M  
Sbjct: 165 NGLVSMYGRCGAWENARQVFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 243 S-GSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLMVKNALIDMY 419
             G  P+AV+LV++L ACA+VGAW +GK+ H Y +R  +        ED+ V NA++DMY
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-------FEDVFVGNAVVDMY 276

Query: 420 AKC 428
           AKC
Sbjct: 277 AKC 279



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
 Frame = +3

Query: 48  DVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVF 227
           D++  NAL+ +YS+  S   A  + + +  K+   +VVTW+ +I G  Q G   EAL++F
Sbjct: 408 DLMVINALIDMYSKCKSPKAARAMFDLIPPKD--RSVVTWTVLIGGNAQHGEANEALELF 465

Query: 228 RKMQLSGS--APNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLMVKN 401
            +M    +   PNA T+   L ACA +GA   G++ HAYV+R             L V N
Sbjct: 466 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM------LFVAN 519

Query: 402 ALIDMYAK 425
            LIDMY+K
Sbjct: 520 CLIDMYSK 527



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/86 (37%), Positives = 49/86 (56%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N L+ +YS+SG    A  + + M+ +    N V+W++++ GY   G G EAL +F +MQ 
Sbjct: 519 NCLIDMYSKSGDVDAARVVFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574

Query: 243 SGSAPNAVTLVSLLSACAAVGAWLQG 320
            G  P+ VT V +L AC+  G   QG
Sbjct: 575 VGLVPDGVTFVVVLYACSHSGMVDQG 600


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  183 bits (464), Expect = 1e-44
 Identities = 90/144 (62%), Positives = 112/144 (77%)
 Frame = +3

Query: 3   MIGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIA 182
           M+ EA K F+ M+ KDVVSWNA+VT YSQ G F +A+ L E++ +++I LNVVTWSAVIA
Sbjct: 300 MMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIA 359

Query: 183 GYTQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINR 362
           GY QRGLG EALDVFR+M L GS PN VTLVSLLS CA+ G  L GKETH + I+ ++N 
Sbjct: 360 GYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419

Query: 363 EYGDCGEDLMVKNALIDMYAKCRN 434
           +  D G+DLMV NALIDMY+KC++
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKS 443



 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/123 (38%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N LV++Y + G++  A ++ +EM ++ +  ++V+W++++A Y Q G  + A+ +F +M  
Sbjct: 184 NGLVSMYGRCGAWENARQVFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 242

Query: 243 S-GSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLMVKNALIDMY 419
             G  P+AV+LV++L ACA+VGAW +GK+ H Y +R  +        ED+ V NA++DMY
Sbjct: 243 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-------FEDVFVGNAVVDMY 295

Query: 420 AKC 428
           AKC
Sbjct: 296 AKC 298



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
 Frame = +3

Query: 48  DVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVF 227
           D++  NAL+ +YS+  S   A  + + +  K+   +VVTW+ +I G  Q G   EAL++F
Sbjct: 427 DLMVINALIDMYSKCKSPKAARAMFDLIPPKD--RSVVTWTVLIGGNAQHGEANEALELF 484

Query: 228 RKMQLSGS--APNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLMVKN 401
            +M    +   PNA T+   L ACA +GA   G++ HAYV+R             L V N
Sbjct: 485 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM------LFVAN 538

Query: 402 ALIDMYAK 425
            LIDMY+K
Sbjct: 539 CLIDMYSK 546



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N L+ +YS+SG    A  + + M+ +    N V+W++++ GY   G G EAL +F +MQ 
Sbjct: 538 NCLIDMYSKSGDVDAARVVFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQK 593

Query: 243 SGSAPNAVTLVSLLSACAAVGAWLQG 320
               P+ VT V +L AC+  G   QG
Sbjct: 594 VXLVPDGVTFVVVLYACSHSGMVDQG 619


>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
           gi|449479088|ref|XP_004155501.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  180 bits (456), Expect = 1e-43
 Identities = 86/144 (59%), Positives = 112/144 (77%)
 Frame = +3

Query: 6   IGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAG 185
           + EA K F+ ++ KDVVSWNA+VT YSQ GSF  A+ L + M +++I+L+V+TWSAVIAG
Sbjct: 285 MNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAG 344

Query: 186 YTQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINRE 365
           Y Q+G G EALDVFR+MQL G  PN VTL SLLS CA+VGA L GK+THAYVI+ ++N  
Sbjct: 345 YAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLN 404

Query: 366 YGDCGEDLMVKNALIDMYAKCRNF 437
           + D  +DL+V N LIDMYAKC+++
Sbjct: 405 WNDKEDDLLVLNGLIDMYAKCKSY 428



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 44/130 (33%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N++V +Y + G+  +A ++ +E+ +++I  ++V+W++++A Y Q G    AL +  +M  
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIE-DIVSWNSILAAYVQGGQSRTALRIAFRMGN 224

Query: 243 SGSA---PNAVTLVSLLSACAAVGAWLQGKETHAYVIR-GVINREYGDCGEDLMVKNALI 410
             S    P+A+TLV++L ACA+V A   GK+ H + +R G++        +D+ V NAL+
Sbjct: 225 HYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLV--------DDVFVGNALV 276

Query: 411 DMYAKCRNFN 440
            MYAKC   N
Sbjct: 277 SMYAKCSKMN 286



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +3

Query: 39  EDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEAL 218
           ++ D++  N L+ +Y++  S+  A  + + +  K+   NVVTW+ +I GY Q G   +AL
Sbjct: 408 KEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD--KNVVTWTVMIGGYAQHGEANDAL 465

Query: 219 DVFRKM--QLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLM 392
            +F ++  Q +   PNA TL   L ACA +G    G++ HAY +R     E       L 
Sbjct: 466 KLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV------LY 519

Query: 393 VKNALIDMYAK 425
           V N LIDMY+K
Sbjct: 520 VGNCLIDMYSK 530



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 49/86 (56%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N L+ +YS+SG    A  + + M  +    NVV+W++++ GY   G G EAL +F +MQ 
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKLR----NVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577

Query: 243 SGSAPNAVTLVSLLSACAAVGAWLQG 320
            G A + +T + +L AC+  G   QG
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQG 603


>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score =  177 bits (449), Expect = 8e-43
 Identities = 87/142 (61%), Positives = 111/142 (78%)
 Frame = +3

Query: 15  AKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQ 194
           A K FD M+ KDVVSWNA+VT YSQ G F +A+ L E+M +++I+L+VV+WSAVIAGY Q
Sbjct: 300 ANKVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQ 359

Query: 195 RGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGD 374
           RGLG EAL+VFR+MQ+ G  PN VTLVSLLS CA+VGA L GKETH Y I+ V+N +  D
Sbjct: 360 RGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSD 419

Query: 375 CGEDLMVKNALIDMYAKCRNFN 440
             ++L+V NA+IDMY KC++ N
Sbjct: 420 PRDELLVVNAIIDMYTKCKDIN 441



 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 51/132 (38%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
 Frame = +3

Query: 42  DKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALD 221
           D +V   NA+V +Y + G+   A ++ +E+   E+  ++V+W+++IA Y Q G     ++
Sbjct: 171 DSNVFVCNAVVAMYGRCGASSYARQMFDELLMGEV-FDLVSWNSMIAVYLQSGDLKSGIE 229

Query: 222 VFRKMQLSGS---APNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLM 392
           +FR+M   G     P+AV+LV++L ACA++G WL GK+ H + IR      YG   ED+ 
Sbjct: 230 LFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHGFAIR------YG-LFEDVF 282

Query: 393 VKNALIDMYAKC 428
           V N+L+DMYAKC
Sbjct: 283 VANSLVDMYAKC 294



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
 Frame = +3

Query: 27  FDTMEDKD-VVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGL 203
           FD  + +D ++  NA++ +Y++         +   +  K+   NVVTW+A+I GY Q G 
Sbjct: 415 FDRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKD--RNVVTWTAMIGGYAQHGE 472

Query: 204 GVEALDVFRKM--QLSGSA-PNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGD 374
             +AL++F +M  Q + S  PNA T+   L ACA + A   G++ HA+V+     R+  D
Sbjct: 473 ANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVL-----RDQYD 527

Query: 375 CGEDLMVKNALIDMYAK 425
           C + L V N LIDMY+K
Sbjct: 528 C-DVLYVANCLIDMYSK 543


>gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  167 bits (423), Expect = 8e-40
 Identities = 86/149 (57%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
 Frame = +3

Query: 6   IGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAG 185
           + +A K F+ ME KDVVSWNA+VT Y+QSG+FG A +L E M  + I L+V+TWSAVIAG
Sbjct: 310 MNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG 369

Query: 186 YTQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGV---I 356
           Y QRG   EALD F++M L GS PN+VT++SLLSACA++GA  QG E HAY ++     +
Sbjct: 370 YAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSL 429

Query: 357 NREYG--DCGEDLMVKNALIDMYAKCRNF 437
           + ++G    GEDLMV NALIDMY+KCR+F
Sbjct: 430 DNDFGGDGDGEDLMVYNALIDMYSKCRSF 458



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
 Frame = +3

Query: 39  EDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEAL 218
           + +D++ +NAL+ +YS+  SF  A  + + +  +E   NVVTW+ +I GY Q G   +AL
Sbjct: 438 DGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRE--RNVVTWTVMIGGYAQYGDSNDAL 495

Query: 219 DVFRKM--QLSGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGEDLM 392
            +F +M  +    APNA T+  +L ACA + A   GK+ HAYV R   + EY        
Sbjct: 496 KIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR---HHEYEP--SVYF 550

Query: 393 VKNALIDMYAKC 428
           V N LIDMY+KC
Sbjct: 551 VANCLIDMYSKC 562



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
 Frame = +3

Query: 42  DKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALD 221
           + +V   NALV +YS+ GS  +A  + +E+  K I  +V++W++++A + +      AL+
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGID-DVISWNSIVAAHVKGSNPRTALE 239

Query: 222 VFRKMQL------SGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRGVINREYGDCGE 383
           +F +M +      +    + +++V++L ACA++ A  Q KE H+Y IR   N  + D   
Sbjct: 240 LFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIR---NGTFADA-- 294

Query: 384 DLMVKNALIDMYAKCRNFN 440
              V NALID YAKC + N
Sbjct: 295 --FVCNALIDTYAKCGSMN 311



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
 Frame = +3

Query: 63  NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYTQRGLGVEALDVFRKMQL 242
           N L+ +YS+ G    A  + + M  +    N V+W+++++GY   G G EALD+F KMQ 
Sbjct: 553 NCLIDMYSKCGDVDTARNVFDSMPKR----NEVSWTSMMSGYGMHGRGKEALDIFDKMQK 608

Query: 243 SGSAPNAVTLVSLLSACAAVGAWLQGKETHAYVIRG---VINREYGDCGEDLMVKNALID 413
           +G  P+ ++ + LL AC+  G   QG      + R    V + E+  C  DL+ +   +D
Sbjct: 609 AGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLD 668