BLASTX nr result

ID: Coptis25_contig00040732 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040732
         (541 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265136.2| PREDICTED: uncharacterized protein LOC100246...   137   8e-31
ref|XP_002299081.1| tir-nbs resistance protein [Populus trichoca...   137   1e-30
ref|XP_004148292.1| PREDICTED: uncharacterized protein LOC101212...   130   2e-28
ref|XP_002864442.1| nucleoside-triphosphatase/ nucleotide bindin...   124   9e-27
ref|XP_002862739.1| hypothetical protein ARALYDRAFT_497314 [Arab...   124   9e-27

>ref|XP_002265136.2| PREDICTED: uncharacterized protein LOC100246258 [Vitis vinifera]
          Length = 985

 Score =  137 bits (346), Expect = 8e-31
 Identities = 86/146 (58%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
 Frame = +1

Query: 115 PISLINTKSSIESSTCNSPSLISPPSSAFVSALQSPYISPRAXXXXXXXXXXXXXXXXXX 294
           P+   N K+S E S  NSPSLISPPSSAFVSALQSPYISPRA                  
Sbjct: 39  PLISPNIKTSAEPSPYNSPSLISPPSSAFVSALQSPYISPRAQIPNLQENPTPVIHPSPP 98

Query: 295 XSCCSGSHSDDIPSTSYTPFTEERFETSDEPTSADQKQLKYVNC----DTAPPRISFSFP 462
            S C GS SDDIPS SYTP   ER + SD+PT     +LK+V C    D APPRISFSFP
Sbjct: 99  ISYC-GSQSDDIPSCSYTP-PPERNDFSDDPT---DPKLKFVTCVPVPDPAPPRISFSFP 153

Query: 463 VPRISLTKASSVSPSCNAKLRSCDVY 540
           VPRIS  K  SVS + NAKLRSCDVY
Sbjct: 154 VPRISFAK-GSVSSASNAKLRSCDVY 178


>ref|XP_002299081.1| tir-nbs resistance protein [Populus trichocarpa]
           gi|222846339|gb|EEE83886.1| tir-nbs resistance protein
           [Populus trichocarpa]
          Length = 996

 Score =  137 bits (344), Expect = 1e-30
 Identities = 91/172 (52%), Positives = 103/172 (59%), Gaps = 11/172 (6%)
 Frame = +1

Query: 58  STKPSHSESDIVVPQ-CQWPPISLINTKSSIESSTCNSPSLISPPSSAFVSALQSPYISP 234
           ST  S    +I+ P  C     +  N K+SIESS CNSP L+SPPSSAFVSALQSPYISP
Sbjct: 26  STSGSKIGKNILTPLGCSNSDSTSPNLKNSIESSPCNSP-LVSPPSSAFVSALQSPYISP 84

Query: 235 RA------XXXXXXXXXXXXXXXXXXXSCCSGSHSDDIPSTSYTPFTEERFETSDEPTSA 396
           RA                         S   GS SDDIPS+SYTP   +++E SD+PT A
Sbjct: 85  RAITPKPQENPAPPENPTPVSHSSPPFSSYRGSQSDDIPSSSYTP-PSDQYEYSDDPTEA 143

Query: 397 DQKQLKYVNC----DTAPPRISFSFPVPRISLTKASSVSPSCNAKLRSCDVY 540
              +LKYV C    D APPRISFSFPVPRIS      VSP+ NAKLRSCDVY
Sbjct: 144 ---KLKYVTCVPVPDPAPPRISFSFPVPRISF--KGPVSPASNAKLRSCDVY 190


>ref|XP_004148292.1| PREDICTED: uncharacterized protein LOC101212498 [Cucumis sativus]
           gi|449525220|ref|XP_004169616.1| PREDICTED:
           uncharacterized LOC101212498 [Cucumis sativus]
          Length = 984

 Score =  130 bits (326), Expect = 2e-28
 Identities = 83/169 (49%), Positives = 105/169 (62%), Gaps = 7/169 (4%)
 Frame = +1

Query: 55  TSTKPSHSESDIVVPQCQWPPISLINTKSSIESSTCNSPSLISPPSSAFVSALQSPYISP 234
           TS+KP  + SD+ +P+           KSSIESS  NSPSL+SPPSSAFVSALQSPYISP
Sbjct: 25  TSSKPPGTSSDLALPEL----------KSSIESSPYNSPSLLSPPSSAFVSALQSPYISP 74

Query: 235 RAXXXXXXXXXXXXXXXXXXXSCCSG--SHSDDIPSTSYTPFTEERFETSDEPTSADQKQ 408
           RA                   +C S   S S+DIPS+SYTP   +++E SD+P+ +   +
Sbjct: 75  RA-VVLKPEEKPIPAESTAALTCHSPLVSQSEDIPSSSYTP-PSDQYEYSDDPSDS---K 129

Query: 409 LKYVNC----DTAPPRISFSFPVPRISLTKASS-VSPSCNAKLRSCDVY 540
           +++V C    D+APPRISFSFPVPR S  K    +SP   +KLRSCDVY
Sbjct: 130 VQFVACVPVPDSAPPRISFSFPVPRTSFAKCGGPLSPVSTSKLRSCDVY 178


>ref|XP_002864442.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
           lyrata subsp. lyrata] gi|297310277|gb|EFH40701.1|
           nucleoside-triphosphatase/ nucleotide binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 972

 Score =  124 bits (311), Expect = 9e-27
 Identities = 71/137 (51%), Positives = 87/137 (63%)
 Frame = +1

Query: 130 NTKSSIESSTCNSPSLISPPSSAFVSALQSPYISPRAXXXXXXXXXXXXXXXXXXXSCCS 309
           ++  SI++S  NSPSL+SPPSSAFVSALQSPYISPRA                       
Sbjct: 42  DSSPSIKNSPFNSPSLVSPPSSAFVSALQSPYISPRATTPITTHKPSPPLSY-------K 94

Query: 310 GSHSDDIPSTSYTPFTEERFETSDEPTSADQKQLKYVNCDTAPPRISFSFPVPRISLTKA 489
           GS S+D+PS+SYTP   +++E SDE  S  + +L     D APPRISFSFPVPR+SL K 
Sbjct: 95  GSQSEDVPSSSYTP-PSDQYEFSDEQPSDRKLKLSACTPDPAPPRISFSFPVPRVSLAKV 153

Query: 490 SSVSPSCNAKLRSCDVY 540
           S  SP+ N KLRS DV+
Sbjct: 154 SVSSPATNTKLRSSDVF 170


>ref|XP_002862739.1| hypothetical protein ARALYDRAFT_497314 [Arabidopsis lyrata subsp.
           lyrata] gi|297308443|gb|EFH38997.1| hypothetical protein
           ARALYDRAFT_497314 [Arabidopsis lyrata subsp. lyrata]
          Length = 741

 Score =  124 bits (311), Expect = 9e-27
 Identities = 71/137 (51%), Positives = 87/137 (63%)
 Frame = +1

Query: 130 NTKSSIESSTCNSPSLISPPSSAFVSALQSPYISPRAXXXXXXXXXXXXXXXXXXXSCCS 309
           ++  SI++S  NSPSL+SPPSSAFVSALQSPYISPRA                       
Sbjct: 42  DSSPSIKNSPFNSPSLVSPPSSAFVSALQSPYISPRATTPITTHKPSPPLSY-------K 94

Query: 310 GSHSDDIPSTSYTPFTEERFETSDEPTSADQKQLKYVNCDTAPPRISFSFPVPRISLTKA 489
           GS S+D+PS+SYTP   +++E SDE  S  + +L     D APPRISFSFPVPR+SL K 
Sbjct: 95  GSQSEDVPSSSYTP-PSDQYEFSDEQPSDRKLKLSACTPDPAPPRISFSFPVPRVSLAKV 153

Query: 490 SSVSPSCNAKLRSCDVY 540
           S  SP+ N KLRS DV+
Sbjct: 154 SVSSPATNTKLRSSDVF 170


Top