BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040721
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   197   9e-49
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           196   2e-48
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   196   2e-48
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   194   7e-48
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       191   8e-47

>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  197 bits (502), Expect = 9e-49
 Identities = 92/196 (46%), Positives = 133/196 (67%)
 Frame = +1

Query: 1    SRMKNFMPLLISSAQSAFVPGRNIQDNIILAHELIRGYNRKHGTRNCAIKIDIKKAFDSV 180
            SR+K  +  +IS +QSAF+PGR + +N++LA E++ GYN K+ +    +K+D++KAFDSV
Sbjct: 543  SRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602

Query: 181  NWEAMSMILQRFGFPPIFIEWLLMCFTTPSYSITINGTSEGFFEGGQGLRQGDPISPYFF 360
             W+ +    +    P  F+ W+  C +TP +S+ +NG+S GFF+  +GLRQGDP+SPY F
Sbjct: 603  RWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLF 662

Query: 361  VLVMEVLSGLLKQALSAGHIHPHSKCRKLSISHLFFADDAMIFCKGDMASILAIKEILAQ 540
            VL MEV S LLK    AG+IH H K   LSISHL FADD M+F  G  +S+  I E L  
Sbjct: 663  VLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDD 722

Query: 541  FSLFTGLNINSDKSSL 588
            F+ ++GL++N DK++L
Sbjct: 723  FASWSGLHVNKDKTNL 738


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  196 bits (499), Expect = 2e-48
 Identities = 94/196 (47%), Positives = 132/196 (67%)
 Frame = +1

Query: 1   SRMKNFMPLLISSAQSAFVPGRNIQDNIILAHELIRGYNRKHGTRNCAIKIDIKKAFDSV 180
           SR++  +  +I  +QSAF+PGR++ +N++LA E++ GYNR + +    +K+D+KKAFDSV
Sbjct: 402 SRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSV 461

Query: 181 NWEAMSMILQRFGFPPIFIEWLLMCFTTPSYSITINGTSEGFFEGGQGLRQGDPISPYFF 360
            WE ++  L+    P  +I W+  C TTPS++I++NG + GFF   +GLRQGDP+SPY F
Sbjct: 462 KWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLF 521

Query: 361 VLVMEVLSGLLKQALSAGHIHPHSKCRKLSISHLFFADDAMIFCKGDMASILAIKEILAQ 540
           VL MEV S LL     +G+IH H K   LSISHL FADD MIF  G  +S+  I E L  
Sbjct: 522 VLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDD 581

Query: 541 FSLFTGLNINSDKSSL 588
           F+ ++GL +N DKS L
Sbjct: 582 FADWSGLKVNKDKSQL 597


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  196 bits (499), Expect = 2e-48
 Identities = 94/196 (47%), Positives = 132/196 (67%)
 Frame = +1

Query: 1   SRMKNFMPLLISSAQSAFVPGRNIQDNIILAHELIRGYNRKHGTRNCAIKIDIKKAFDSV 180
           SR++  +  +I  +QSAF+PGR++ +N++LA E++ GYNR + +    +K+D+KKAFDSV
Sbjct: 402 SRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSV 461

Query: 181 NWEAMSMILQRFGFPPIFIEWLLMCFTTPSYSITINGTSEGFFEGGQGLRQGDPISPYFF 360
            WE ++  L+    P  +I W+  C TTPS++I++NG + GFF   +GLRQGDP+SPY F
Sbjct: 462 KWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLF 521

Query: 361 VLVMEVLSGLLKQALSAGHIHPHSKCRKLSISHLFFADDAMIFCKGDMASILAIKEILAQ 540
           VL MEV S LL     +G+IH H K   LSISHL FADD MIF  G  +S+  I E L  
Sbjct: 522 VLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDD 581

Query: 541 FSLFTGLNINSDKSSL 588
           F+ ++GL +N DKS L
Sbjct: 582 FADWSGLKVNKDKSQL 597


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  194 bits (494), Expect = 7e-48
 Identities = 91/196 (46%), Positives = 132/196 (67%)
 Frame = +1

Query: 1    SRMKNFMPLLISSAQSAFVPGRNIQDNIILAHELIRGYNRKHGTRNCAIKIDIKKAFDSV 180
            SR+K  +  +IS +QSAF+PGR + +N++LA E++ GYN K+ +    +K+D++KAFDSV
Sbjct: 543  SRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602

Query: 181  NWEAMSMILQRFGFPPIFIEWLLMCFTTPSYSITINGTSEGFFEGGQGLRQGDPISPYFF 360
             W+ +    +    P  F+ W+  C +TP +S+ +NG+S GFF+  +GLRQGDP+SPY F
Sbjct: 603  RWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLF 662

Query: 361  VLVMEVLSGLLKQALSAGHIHPHSKCRKLSISHLFFADDAMIFCKGDMASILAIKEILAQ 540
            VL MEV S LLK    AG+I  H K   LSISHL FADD M+F  G  +S+  I E L  
Sbjct: 663  VLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDD 722

Query: 541  FSLFTGLNINSDKSSL 588
            F+ ++GL++N DK++L
Sbjct: 723  FASWSGLHVNKDKTNL 738


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  191 bits (485), Expect = 8e-47
 Identities = 93/195 (47%), Positives = 129/195 (66%)
 Frame = +1

Query: 4    RMKNFMPLLISSAQSAFVPGRNIQDNIILAHELIRGYNRKHGTRNCAIKIDIKKAFDSVN 183
            R++  +  +ISSAQSAF+PGR++ +N++LA +L+ GYN  + +    +K+D+KKAFDSV 
Sbjct: 543  RLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVR 602

Query: 184  WEAMSMILQRFGFPPIFIEWLLMCFTTPSYSITINGTSEGFFEGGQGLRQGDPISPYFFV 363
            WE +   L+    P  FI W+  C +TP+++++ING + GFF+  +GLRQGDP+SPY FV
Sbjct: 603  WEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFV 662

Query: 364  LVMEVLSGLLKQALSAGHIHPHSKCRKLSISHLFFADDAMIFCKGDMASILAIKEILAQF 543
            L ME  S LL     +G IH H K   LSISHL FADD MIF  G   S+  I E L  F
Sbjct: 663  LAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDF 722

Query: 544  SLFTGLNINSDKSSL 588
            + ++GL +N DKS L
Sbjct: 723  ASWSGLKVNKDKSHL 737