BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040720
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containi...   138   4e-31
emb|CBI35789.3| unnamed protein product [Vitis vinifera]              137   1e-30
ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]   137   1e-30
ref|XP_002529554.1| pentatricopeptide repeat-containing protein,...   131   7e-29

>ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Glycine max]
          Length = 650

 Score =  138 bits (348), Expect = 4e-31
 Identities = 66/96 (68%), Positives = 76/96 (79%)
 Frame = +1

Query: 1   FVYTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGE 180
           FVY AILKGLC SGKLNEAC FLYELVD G+ PNI SYNILI+ A  LGLK EAYQI  E
Sbjct: 547 FVYAAILKGLCHSGKLNEACHFLYELVDSGISPNIFSYNILINCACNLGLKIEAYQIVRE 606

Query: 181 MRKNGIVPDSITWRILEKLHGNSRKPLCDHDPSLES 288
           M+KNG+ PDS+TWRIL+KLHG  RK +   DP++ +
Sbjct: 607 MKKNGLTPDSVTWRILDKLHGKVRKDIHSEDPTMST 642


>emb|CBI35789.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  137 bits (344), Expect = 1e-30
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = +1

Query: 1    FVYTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGE 180
            FVY AILKGLC SGKLNEACDFLYELVDCGV  N+V+YNILID+A KLG K+EAY I  E
Sbjct: 828  FVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQE 887

Query: 181  MRKNGIVPDSITWRILEKLHGNSRK 255
            M+KNG+ PD++TWRIL KLHGN  K
Sbjct: 888  MKKNGLTPDAVTWRILHKLHGNVGK 912



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 46/76 (60%)
 Frame = +1

Query: 7   YTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGEMR 186
           Y  ++  LC+  + NEA    +++   G  PN VSY  LID   K+G +  A+++  EM 
Sbjct: 403 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 462

Query: 187 KNGIVPDSITWRILEK 234
           ++G+VP+S+T+ +L K
Sbjct: 463 ESGVVPNSLTYSVLLK 478


>ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Vitis vinifera]
          Length = 680

 Score =  137 bits (344), Expect = 1e-30
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   FVYTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGE 180
           FVY AILKGLC SGKLNEACDFLYELVDCGV  N+V+YNILID+A KLG K+EAY I  E
Sbjct: 596 FVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQE 655

Query: 181 MRKNGIVPDSITWRILEKLHGNSRK 255
           M+KNG+ PD++TWRIL KLHGN  K
Sbjct: 656 MKKNGLTPDAVTWRILHKLHGNVGK 680



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 46/76 (60%)
 Frame = +1

Query: 7   YTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGEMR 186
           Y  ++  LC+  + NEA    +++   G  PN VSY  LID   K+G +  A+++  EM 
Sbjct: 171 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 230

Query: 187 KNGIVPDSITWRILEK 234
           ++G+VP+S+T+ +L K
Sbjct: 231 ESGVVPNSLTYSVLLK 246


>emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]
          Length = 959

 Score =  137 bits (344), Expect = 1e-30
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = +1

Query: 1    FVYTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGE 180
            FVY AILKGLC SGKLNEACDFLYELVDCGV  N+V+YNILID+A KLG K+EAY I  E
Sbjct: 875  FVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQE 934

Query: 181  MRKNGIVPDSITWRILEKLHGNSRK 255
            M+KNG+ PD++TWRIL KLHGN  K
Sbjct: 935  MKKNGLTPDAVTWRILHKLHGNVGK 959



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 46/76 (60%)
 Frame = +1

Query: 7   YTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGEMR 186
           Y  ++  LC+  + NEA    +++   G  PN VSY  LID   K+G +  A+++  EM 
Sbjct: 461 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 520

Query: 187 KNGIVPDSITWRILEK 234
           ++G+VP+S+T+ +L K
Sbjct: 521 ESGVVPNSLTYSVLLK 536


>ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530966|gb|EEF32823.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 678

 Score =  131 bits (329), Expect = 7e-29
 Identities = 58/85 (68%), Positives = 73/85 (85%)
 Frame = +1

Query: 1   FVYTAILKGLCASGKLNEACDFLYELVDCGVFPNIVSYNILIDNAVKLGLKKEAYQIAGE 180
           FVY +ILKGLC +GKL+EAC FLYELVD GV PNI+SYNI+ID+A KLG+K+EAYQ+  E
Sbjct: 594 FVYASILKGLCRAGKLDEACHFLYELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTE 653

Query: 181 MRKNGIVPDSITWRILEKLHGNSRK 255
           MRKNG+ PD++TWRIL+KLH   ++
Sbjct: 654 MRKNGLTPDAVTWRILDKLHATFKR 678